Bio.PDB.StructureAlignment module¶
Map residues of two structures to each other based on a FASTA alignment.
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class
Bio.PDB.StructureAlignment.
StructureAlignment
(fasta_align, m1, m2, si=0, sj=1)¶ Bases:
object
Class to align two structures based on an alignment of their sequences.
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__init__
(self, fasta_align, m1, m2, si=0, sj=1)¶ Initialize.
- Attributes:
fasta_align - Alignment object
m1, m2 - two models
si, sj - the sequences in the Alignment object that correspond to the structures
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get_maps
(self)¶ Map residues between the structures.
Return two dictionaries that map a residue in one structure to the equivealent residue in the other structure.
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get_iterator
(self)¶ Create an iterator over all residue pairs.
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