Bio.AlignIO.ClustalIO module¶
Bio.AlignIO support for “clustal” output from CLUSTAL W and other tools.
You are expected to use this module via the Bio.AlignIO functions (or the Bio.SeqIO functions if you want to work directly with the gapped sequences).
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class
Bio.AlignIO.ClustalIO.
ClustalWriter
(handle)¶ Bases:
Bio.AlignIO.Interfaces.SequentialAlignmentWriter
Clustalw alignment writer.
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write_alignment
(self, alignment)¶ Use this to write (another) single alignment to an open file.
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class
Bio.AlignIO.ClustalIO.
ClustalIterator
(handle, seq_count=None)¶ Bases:
Bio.AlignIO.Interfaces.AlignmentIterator
Clustalw alignment iterator.
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__next__
(self)¶ Parse the next alignment from the handle.
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