Bio.SearchIO.HmmerIO.hmmer3_text module¶
Bio.SearchIO parser for HMMER plain text output format.
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class
Bio.SearchIO.HmmerIO.hmmer3_text.
Hmmer3TextParser
(handle)¶ Bases:
object
Parser for the HMMER 3.0 text output.
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__init__
(self, handle)¶ Initialize the class.
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__iter__
(self)¶ Iterate over query results.
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class
Bio.SearchIO.HmmerIO.hmmer3_text.
Hmmer3TextIndexer
(*args, **kwargs)¶ Bases:
Bio.SearchIO.HmmerIO._base._BaseHmmerTextIndexer
Indexer class for HMMER plain text output.
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qresult_start
= b'Query: '¶
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qresult_end
= b'//'¶
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__iter__
(self)¶ Iterate over Hmmer3TextIndexer; yields query results’ key, offsets, 0.
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