Bio.SearchIO.HmmerIO.hmmer3_tab module¶
Bio.SearchIO parser for HMMER table output format.
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class
Bio.SearchIO.HmmerIO.hmmer3_tab.
Hmmer3TabParser
(handle)¶ Bases:
object
Parser for the HMMER table format.
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__init__
(self, handle)¶ Initialize the class.
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__iter__
(self)¶ Iterate over Hmmer3TabParser, yields query results.
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class
Bio.SearchIO.HmmerIO.hmmer3_tab.
Hmmer3TabIndexer
(filename, **kwargs)¶ Bases:
Bio.SearchIO._index.SearchIndexer
Indexer class for HMMER table output.
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__iter__
(self)¶ Iterate over the file handle; yields key, start offset, and length.
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get_raw
(self, offset)¶ Return the raw bytes string of a QueryResult object from the given offset.
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