Logo

Table of contents

  • Biopython Tutorial & Cookbook
  • API documentation
Biopython
  • Biopython Documentation
  • Edit on GitHub
Next

Biopython Documentation

This is from Biopython 1.86.dev0.

Table of contents

  • Biopython Tutorial & Cookbook
    • Introduction
    • Quick Start – What can you do with Biopython?
    • Sequence objects
    • Sequence annotation objects
    • Sequence Input/Output
    • Sequence alignments
    • Pairwise sequence alignment
    • Multiple Sequence Alignment objects
    • Pairwise alignments using pairwise2
    • BLAST (new)
    • BLAST (old)
    • BLAST and other sequence search tools
    • Accessing NCBI’s Entrez databases
    • Swiss-Prot and ExPASy
    • Going 3D: The PDB module
    • Bio.PopGen: Population genetics
    • Phylogenetics with Bio.Phylo
    • Sequence motif analysis using Bio.motifs
    • Cluster analysis
    • Graphics including GenomeDiagram
    • KEGG
    • Bio.phenotype: analyze phenotypic data
    • Cookbook – Cool things to do with it
    • The Biopython testing framework
    • Where to go from here – contributing to Biopython
    • Appendix: Useful stuff about Python
    • Bibliography
  • API documentation
    • Bio package
    • BioSQL package
Next

© Copyright 1999-2024, The Biopython Contributors. See the Biopython license terms.

Built with Sphinx using a theme provided by Read the Docs.
Biopython v: 1.86.dev0
Versions
Previous
Latest
Develop
Biopython Project
Homepage
On GitHub