Bio.KEGG.KGML package

Submodules

• Bio.KEGG.KGML.KGML_parser module
  • read()
  • parse()
  • KGMLParser
    • KGMLParser.__init__()
    • KGMLParser.parse()
• Bio.KEGG.KGML.KGML_pathway module
  • Pathway
    • Pathway.__init__()
    • Pathway.get_KGML()
    • Pathway.add_entry()
    • Pathway.remove_entry()
    • Pathway.add_reaction()
    • Pathway.remove_reaction()
    • Pathway.add_relation()
    • Pathway.remove_relation()
    • Pathway.__str__()
    • Pathway.name
    • Pathway.number
    • Pathway.compounds
    • Pathway.maps
    • Pathway.orthologs
    • Pathway.genes
    • Pathway.reactions
    • Pathway.reaction_entries
    • Pathway.relations
    • Pathway.element
    • Pathway.bounds
  • Entry
    • Entry.__init__()
    • Entry.__str__()
    • Entry.add_component()
    • Entry.remove_component()
    • Entry.add_graphics()
    • Entry.remove_graphics()
    • Entry.name
    • Entry.reaction
    • Entry.id
    • Entry.element
    • Entry.bounds
    • Entry.is_reactant
  • Component
    • Component.__init__()
    • Component.id
    • Component.element
  • Graphics
    • Graphics.__init__()
    • Graphics.x
    • Graphics.y
    • Graphics.width
    • Graphics.height
    • Graphics.coords
    • Graphics.fgcolor
    • Graphics.bgcolor
    • Graphics.element
    • Graphics.bounds
    • Graphics.centre
  • Reaction
    • Reaction.__init__()
    • Reaction.__str__()
    • Reaction.add_substrate()
    • Reaction.add_product()
    • Reaction.id
    • Reaction.name
    • Reaction.substrates
    • Reaction.products
    • Reaction.entry
    • Reaction.reactant_ids
    • Reaction.element
  • Relation
    • Relation.__init__()
    • Relation.__str__()
    • Relation.entry1
    • Relation.entry2
    • Relation.element

Module contents

Code to work with data from the KEGG database.

References: Kanehisa, M. and Goto, S.; KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28, 29-34 (2000).

URL: http://www.genome.ad.jp/kegg/