Bio.Align.msf module

Bio.Align support for GCG MSF format.

The file format was produced by the GCG PileUp and LocalPileUp tools, and later tools such as T-COFFEE and MUSCLE support it as an optional output format.

You are expected to use this module via the Bio.Align functions.

class Bio.Align.msf.AlignmentIterator(source)

Bases: Bio.Align.interfaces.AlignmentIterator

GCG MSF alignment iterator.

fmt: Optional[str] = 'MSF'

__abstractmethods__ = frozenset({})

__annotations__ = {'fmt': 'Optional[str]'}