Bio.Align.hhr module
Bio.Align support for hhr files generated by HHsearch or HHblits in HH-suite.
This module provides support for output in the hhr file format generated by HHsearch or HHblits in HH-suite.
You are expected to use this module via the Bio.Align functions.
- class Bio.Align.hhr.AlignmentIterator(source)
Bases:
Bio.Align.interfaces.AlignmentIteratorAlignment iterator for hhr output files generated by HHsearch or HHblits.
HHsearch and HHblits are part of the HH-suite of programs for Hidden Markov Models. An output files in the hhr format contains multiple pairwise alignments for a single query sequence.
- fmt = 'hhr'
- __len__()
- __abstractmethods__ = frozenset({})