Bio.Align.clustal module
Bio.Align support for “clustal” output from CLUSTAL W and other tools.
You are expected to use this module via the Bio.Align functions (or the Bio.SeqIO functions if you are interested in the sequences only).
- class Bio.Align.clustal.AlignmentWriter(target)
Bases:
Bio.Align.interfaces.AlignmentWriterClustalw alignment writer.
- fmt = 'Clustal'
- write_header(alignments)
Use this to write the file header.
- format_alignment(alignment)
Return a string with a single alignment in the Clustal format.
- __abstractmethods__ = frozenset({})
- class Bio.Align.clustal.AlignmentIterator(source)
Bases:
Bio.Align.interfaces.AlignmentIteratorClustalw alignment iterator.
- fmt = 'Clustal'
- __abstractmethods__ = frozenset({})