Bio.PDB.mmtf package

Submodules

• Bio.PDB.mmtf.DefaultParser module
• Bio.PDB.mmtf.mmtfio module

Module contents

Support for loading 3D structures stored in MMTF files.

Bio.PDB.mmtf.get_from_decoded(decoder)

Return structure from decoder.

class Bio.PDB.mmtf.MMTFParser

Bases: object

Class to get a Biopython structure from a URL or a filename.

static get_structure_from_url(pdb_id)

Get a structure from a URL - given a PDB id.

Parameters

pdb_id – the input PDB id

Returns

the structure

static get_structure(file_path)

Get a structure from a file - given a file path.

Parameters

file_path – the input file path

Returns

the structure