Generic functions which are useful for working with HMMs.
This just collects general functions which you might like to use in dealing with HMMs.
- Bio.HMM.Utilities.pretty_print_prediction(emissions, real_state, predicted_state, emission_title='Emissions', real_title='Real State', predicted_title='Predicted State', line_width=75)¶
Print out a state sequence prediction in a nice manner.
emissions – The sequence of emissions of the sequence you are dealing with.
real_state – The actual state path that generated the emissions.
predicted_state – A state path predicted by some kind of HMM model.