Bio.codonalign.codonalphabet module¶
Code for Codon Alphabet.
CodonAlphabet class is inherited from Alphabet class. It is an alphabet for CodonSeq class.
-
class
Bio.codonalign.codonalphabet.CodonAlphabet¶ Bases:
Bio.Alphabet.AlphabetGeneric Codon Alphabet with a size of three.
-
size= 3¶
-
letters= None¶
-
name= ''¶
-
__repr__(self)¶ Represent the alphabet class as a string for debugging.
-
-
Bio.codonalign.codonalphabet.get_codon_alphabet(codon_table, gap_char='-')¶ Construct a CodonAlphabet from a given codon table.
-
Bio.codonalign.codonalphabet.compare_codon_alphabet(codon_alphabet_1, codon_alphabet_2)¶ Compare two codon alphabet.
Return True is they have the same letter and gap_char, Otherwise return False.