Bio.SeqIO.AbiIO module

Bio.SeqIO parser for the ABI format.

ABI is the format used by Applied Biosystem’s sequencing machines to store sequencing results.

For more details on the format specification, visit:

class Bio.SeqIO.AbiIO.AbiIterator(source, alphabet=None, trim=False)

Bases: Bio.SeqIO.Interfaces.SequenceIterator

Parser for Abi files.

__init__(self, source, alphabet=None, trim=False)

Return an iterator for the Abi file format.

parse(self, handle)

Start parsing the file, and return a SeqRecord generator.

iterate(self, handle)

Parse the file and generate SeqRecord objects.