Bio.Phylo.Newick module¶
Classes corresponding to Newick trees, also used for Nexus trees.
See classes in Bio.Nexus
: Trees.Tree, Trees.NodeData, and Nodes.Chain.
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class
Bio.Phylo.Newick.
Tree
(root=None, rooted=False, id=None, name=None, weight=1.0)¶ Bases:
Bio.Phylo.BaseTree.Tree
Newick Tree object.
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__init__
(self, root=None, rooted=False, id=None, name=None, weight=1.0)¶ Initialize parameters for a Newick tree object.
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class
Bio.Phylo.Newick.
Clade
(branch_length=None, name=None, clades=None, confidence=None, comment=None)¶ Bases:
Bio.Phylo.BaseTree.Clade
Newick Clade (sub-tree) object.
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__init__
(self, branch_length=None, name=None, clades=None, confidence=None, comment=None)¶ Initialize parameters for a Newick Clade object.
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