Bio.FSSP.fssp_rec module

A superclass for reading [f]ixed-column type [f]lat-[f]ile records.

class Bio.FSSP.fssp_rec.fff_rec(inrec='')

Bases: object

Define superclass for reading fixed-column type flat-file records.

__init__(self, inrec='')

Initialize the class.

__repr__(self)

Return FSSP record object as a string.

__len__(self)

Return length (number of rows).

__getitem__(self, index)

Extract a subset of the record (treating it like an array).

class Bio.FSSP.fssp_rec.align

Bases: object

Definition of the align section in a FSSP file.

abs_res_num = (0, 4)

pdb_res_num = (4, 9)

chain_id = 10

res_name = 12

ss1 = 15

turn3 = 17

turn4 = 18

turn5 = (20, 22)

acc = (34, 37)

start_aa_list = 42