Bio.HMM.Utilities module

Generic functions which are useful for working with HMMs.

This just collects general functions which you might like to use in dealing with HMMs.

Bio.HMM.Utilities.pretty_print_prediction(emissions, real_state, predicted_state, emission_title='Emissions', real_title='Real State', predicted_title='Predicted State', line_width=75)

Print out a state sequence prediction in a nice manner.

  • emissions – The sequence of emissions of the sequence you are dealing with.

  • real_state – The actual state path that generated the emissions.

  • predicted_state – A state path predicted by some kind of HMM model.