Bio.Blast.ParseBlastTable module
A parser for the NCBI blastpgp version 2.2.5 output format.
Currently only supports the ‘-m 9’ option, (table w/ annotations).
Returns a BlastTableRec instance
-
class
Bio.Blast.ParseBlastTable.
BlastTableEntry
(in_rec)
Bases: object
Container for Blast Table Entry, the field values from the table.
-
__init__
(self, in_rec)
Initialize the class.
-
class
Bio.Blast.ParseBlastTable.
BlastTableRec
Bases: object
Container for Blast Table record, list of Blast Table Entries.
-
__init__
(self)
Initialize the class.
-
add_entry
(self, entry)
Add entry to Blast Table.
-
class
Bio.Blast.ParseBlastTable.
BlastTableReader
(handle)
Bases: object
Reader for the output of blastpgp.
-
__init__
(self, handle)
Initialize the class.
-
__next__
(self)
Return the next record when iterating over the file.