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Recent Commits to biopython:master Added color_scheme keyword to weblogo to allow users to set their own colors (suggested by Anthony Mathelier of UBC) Updated FastaWriter documentation to reflect reality Skip BGZF tests in test_SeqIO_index.py if issue 17666 Stupid typo, broken under Python 3 Revert moving import (must be after edit PYTHONPATH) Can't import anything from Bio in run_tests.py Skip Bio.bgzf doctest if gzip broken http://bugs.python.org/issue17666 Skip test_bgzf.py if Python's gzip is broken Fix testing with clustalw 1.83 Update MANIFEST to include Doc/examples/my_blat.psi Update MANIFEST to include Doc/examples/my_blast.xml Avoid the sub_features deprecation warning in these methods. Refactor test_BWA_tool.py - may fix random buildbot failures. Forgot the Python 2.5 with_statement import Close handles; More explicit error messages Use filenames with SeqIO.read in Tutorial Should have tested this on a machine without bwa installed... Thank Saket Choudhary and mention his BWA wrapper in NEWS file Fixed BWA doctests Style changes, removing redundant help test (doctests still break)