User contributions
From Biopython
(Latest | Earliest) View (newer 50) (older 50) (20 | 50 | 100 | 250 | 500)
- 16:25, 26 June 2010 (hist) (diff) Phylo cookbook (→Convert to a NumPy array or matrix: touchup) (top)
- 16:17, 26 June 2010 (hist) (diff) Phylo cookbook (→Convert to a NumPy array or matrix: Added implementations for adjacency and distance matrix)
- 15:28, 26 June 2010 (hist) (diff) Phylo (Added links to the cookbook and PhyloXML pages in the intro) (top)
- 15:13, 26 June 2010 (hist) (diff) Phylo cookbook (→Convenience functions: Added two functions suggested by Joel Berendzen on Bugzilla)
- 04:14, 26 June 2010 (hist) (diff) Phylo cookbook (Convenience functions: index clades by name)
- 02:39, 26 June 2010 (hist) (diff) Phylo cookbook (→Comparing trees: techniques mentioned in Inferring Phylogenies (Felsenstein 2004))
- 02:36, 26 June 2010 (hist) (diff) Phylo cookbook (→Consensus methods: Pub links for the latter two)
- 02:30, 26 June 2010 (hist) (diff) Phylo cookbook (→Consensus methods: two more method ideas)
- 16:09, 25 June 2010 (hist) (diff) Phylo (→Displaying trees: Linked to the Phylo cookbook page)
- 16:07, 25 June 2010 (hist) (diff) Phylo cookbook (Linked to the main Phylo page)
- 16:04, 25 June 2010 (hist) (diff) Phylo cookbook (Added a Graphics section)
- 16:01, 25 June 2010 (hist) (diff) Phylo cookbook (Added to the Cookbook category)
- 15:59, 25 June 2010 (hist) (diff) N Phylo cookbook (Started a cookbook page with some ideas)
- 19:36, 3 June 2010 (hist) (diff) Google Summer of Code (Joao is our GSoC student this year) (top)
- 16:29, 31 May 2010 (hist) (diff) Active projects (→Current projects: Bump GSOC 2010 to the top; updated Phylo and Biogeography)
- 18:05, 23 May 2010 (hist) (diff) Phylo (→Example pipeline: ClustalW param is infile, not input)
- 06:17, 21 May 2010 (hist) (diff) Phylo (Moved the example pipeline here from the PhyloXML page)
- 06:15, 21 May 2010 (hist) (diff) PhyloXML (→Example pipeline: Moved this section to the main Phylo page) (top)
- 00:45, 21 May 2010 (hist) (diff) PhyloXML (Clarified the preamble)
- 00:42, 21 May 2010 (hist) (diff) PhyloXML (→Example pipeline: use clustalw to infer the tree -- simpler than phylip)
- 00:20, 21 May 2010 (hist) (diff) Phylo (→Displaying trees: pretty_print became __str__)
- 00:17, 21 May 2010 (hist) (diff) Phylo (→Exporting to other object representations: to_adjacency_matrix was removed from utils)
- 00:12, 21 May 2010 (hist) (diff) Phylo (Available in v1.54; works in Jython)
- 15:10, 22 April 2010 (hist) (diff) PhyloXML (→About the format: Used real Phylo features to show object tree and phylogram)
- 23:47, 18 April 2010 (hist) (diff) PhyloXML (→Using PhyloXML objects: outline for detailed class descriptions)
- 19:51, 26 March 2010 (hist) (diff) Google Summer of Code (→PDB-Tidy: command-line tools for manipulating PDB files: Added Diana Jaunzeikare as a co-mentor)
- 16:51, 26 March 2010 (hist) (diff) Google Summer of Code (→PDB-Tidy: command-line tools for manipulating PDB files: Split off the bit about external applications into a separate idea)
- 20:14, 24 March 2010 (hist) (diff) Google Summer of Code (→PDB-Tidy: command-line tools for manipulating PDB files: Ramachandran plot would be cool (plus touch-ups))
- 18:30, 19 March 2010 (hist) (diff) Google Summer of Code (→PDB-Tidy: command-line tools for manipulating PDB files: More abstract -- let students brainstorm)
- 16:36, 19 March 2010 (hist) (diff) Google Summer of Code (→PDB-Tidy: command-line tools for manipulating PDB files: Anyone else want to co-mentor this?)
- 17:51, 17 March 2010 (hist) (diff) User:EricTalevich (Added outgoing links to aid the quest for contact info) (top)
- 15:29, 14 March 2010 (hist) (diff) m Google Summer of Code (→Biopython and PyCogent interoperability: changed phyloXML capitalization, relinked my name)
- 18:29, 12 March 2010 (hist) (diff) Google Summer of Code (→2010 Project ideas: Added PDB-Tidy idea)
- 04:26, 2 March 2010 (hist) (diff) Phylo (→Displaying trees: added draw_graphviz example images; fixed example code)
- 04:06, 2 March 2010 (hist) (diff) N File:Phylo-apaf-node0.png (Dendrogram of apaf.xml drawn with Bio.Phylo.draw_graphviz(apaf, node_size=0).) (top)
- 04:05, 2 March 2010 (hist) (diff) N File:Phylo-apaf.png (Dendrogram of apaf.xml drawn with Bio.Phylo.draw_graphviz (default).) (top)
- 03:48, 2 March 2010 (hist) (diff) Phylo (→Displaying trees: draw_ascii has no labeller argument)
- 03:42, 2 March 2010 (hist) (diff) Phylo (→Displaying trees: added draw_ascii examples)
- 00:05, 25 February 2010 (hist) (diff) Documentation (→Presentations: Added my UGA presentation)
- 23:21, 24 February 2010 (hist) (diff) Phylo (Adding this page to the Wiki Documentation category, really)
- 23:19, 24 February 2010 (hist) (diff) Phylo (draw_ascii stub; adding this page to the Wiki Documentation category (?))
- 23:11, 24 February 2010 (hist) (diff) Active projects (→PhyloXML driver (GSoC): It's not a GSoC project anymore)
- 17:12, 25 January 2010 (hist) (diff) Phylo (Clarified availability)
- 17:04, 25 January 2010 (hist) (diff) PhyloXML (Merged "Availability" with the intro)
- 16:56, 25 January 2010 (hist) (diff) PhyloXML (→Summer of Code project: Historical note)
- 03:54, 14 January 2010 (hist) (diff) Phylo (→Utilities: Reorg & described to_adjacency_matrix)
- 03:27, 14 January 2010 (hist) (diff) Phylo (→Sub-modules: No Phylo.IO; wiki-linked AlignIO)
- 03:25, 14 January 2010 (hist) (diff) Phylo (→write(): Caught a stray TreeIO reference)
- 03:22, 14 January 2010 (hist) (diff) PhyloXML (Replaced references to Bio.Tree with Phylo)
- 03:19, 14 January 2010 (hist) (diff) PhyloXML (Replaced references to TreeIO with Phylo)
(Latest | Earliest) View (newer 50) (older 50) (20 | 50 | 100 | 250 | 500)
