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Recent Commits to biopython:master Correct typo in MANIFEST, was missing Doc/examples/my_blat.psl Fix bug caused by default hit/query argument in HSPFragment Revert to using strings for non-cascading default values Add tests for empty Hits in hmmer3-text (test case from Kai Blin) hmmer3-text now handles empty hits properly Add tests for new Hit inits Update HSPFragment default args Update QueryResult.__init__ pattern to match Hit's Refactor validation out of fullcascade into the container objects Remove attribute checking in optionalcascade getter Change Hit's default attribute values and allow for flexible setting from empty Hit Initialize QueryResult with/without IDs and/or Hits and change default values to None More explicit conditional handling in FastaIO Merge partialcascade into optionalcascade Remove explicit '._items' slicing in optionalcascade optionalcascade now requires container and item attr names as args Clarify docstring import for newcomers. Fix for missing isnan on Python 2.5 Adding static argument to Bio.Application, use for BWA Omit argument with default value