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Latest revision as of 12:52, 24 September 2009

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Core commits

Added color_scheme keyword to weblogo to allow users to set their own colors (suggested by Anthony Mathelier of UBC)
Updated FastaWriter documentation to reflect reality
Skip BGZF tests in test_SeqIO_index.py if issue 17666
Stupid typo, broken under Python 3
Revert moving import (must be after edit PYTHONPATH)
Can't import anything from Bio in run_tests.py
Skip Bio.bgzf doctest if gzip broken http://bugs.python.org/issue17666
Skip test_bgzf.py if Python's gzip is broken
Fix testing with clustalw 1.83
Update MANIFEST to include Doc/examples/my_blat.psi
Update MANIFEST to include Doc/examples/my_blast.xml
Avoid the sub_features deprecation warning in these methods.
Refactor test_BWA_tool.py - may fix random buildbot failures.
Forgot the Python 2.5 with_statement import
Close handles; More explicit error messages
Use filenames with SeqIO.read in Tutorial
Should have tested this on a machine without bwa installed...
Thank Saket Choudhary and mention his BWA wrapper in NEWS file
Fixed BWA doctests
Style changes, removing redundant help test (doctests still break)

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+| [http://github.com/feeds/biopython/commits/biopython/master RSS]
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-| <rss>http://biopython.open-bio.org/CVS2RSS/biopython.rss|date|max=20</rss>
+| <rss>http://github.com/feeds/biopython/commits/biopython/master|date|max=20</rss>
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