Participants

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Note: People are listed here alphabetically by surname. This is only a partial listing, see also the contributor listing in the Biopython source code.

Contents

Sebastian Bassi

E-mail sbassi@genesdigitales.com
Affiliation Universidad Nacional de Quilmes
Location Balcarce, Buenos Aires, Argentina
Uses Python for Bioinformatics and data manipulation
Work/Research Interests IT Manager Advanta Seeds in Balcarce Research Station
Biopython Contributions LCC and primer Tm calculation function
Relevant URL http://www.bioinformatica.info


Jeffrey Chang

E-mail jchang@smi.stanford.edu
Affiliation Postdoctoral Fellow, Duke University
Location Durham, NC
Uses Python for Eating spam
Work/Research Interests Bioinformatics
Biopython Contributions Co-Founder
Relevant URL http://www.jeffchang.com/


Brad Chapman

Affiliation Massachusetts General Hospital
Location Boston, MA
Biopython Contributions Docs, GenBank, BioSQL
Relevant URL http://bcbio.wordpress.com/


Peter Cock

E-mail See my web page
Affiliation Plant Pathology, SCRI; previously MOAC Doctoral Training Centre, University of Warwick
Location Dundee, Scotland, UK
Uses Python for Bioinformatics, controlling R with rpy, ...
Work/Research Interests Bacterial signalling, genomics
Biopython Contributions Sequence parsing including Bio.SeqIO, Bio.AlignIO, our BioSQL interface, and documentation
Relevant URL http://www.scri.ac.uk/staff/petercock and http://www.warwick.ac.uk/go/peter_cock/python/
github http://github.com/peterjc


Andrew Dalke

E-mail dalke@dalkescientific.com
Affiliation Dalke Scientific Software, LLC
Location Santa Fe, NM
Uses Python for Just about anything
Work/Research Interests Large-scale usable systems for scientists
Biopython Contributions Co-Founder, Seq, Martel, indexing, EUtils, patterns, parsing, ...
Relevant URL http://www.dalkescientific.com/


Michiel de Hoon

E-mail See my web page
Affiliation RIKEN Omics Science Center
Location Yokohama
Uses Python for High-throughput data analysis & Scientific visualization
Work/Research Interests RNA Genomics
Biopython Contributions Bio.Cluster; Bio.Entrez; Windows installer
Relevant URL http://bonsai.ims.u-tokyo.ac.jp/~mdehoon


Iddo Friedberg

E-mail idoerg "at" burnham.org
Affiliation The Burnham Institute
Location La-Jolla, CA, USA
Uses Python for Maintaining World Domination
Work/Research Interests Structural Bioinformatics
Biopython Contributions SubsMat, FSSP, bits of Align, bits of the Manual, and a lot of silly questions to the lists
Relevant URL http://iddo-friedberg.org


Christian Gunning

E-mail bioboy at uga dot edu
Affiliation human, mountain
Location Athens, GA
Uses Python for strings, as glue; also on laundry and dirty dishes
Work/Research Interests arabidopsis; Biological Sequence Analysis, Durbin et al.; Primer3; www.swig.org; R programming language and rpy.sourceforge.net
Biopython Contributions
Relevant URL http://www.botany.uga.edu/courses/bioinformatics/current/index.html


Thomas Hamelryck

E-mail thamelry - binf ku dk
Affiliation University of Copenhagen
Location Copenhagen, Denmark
Uses Python for Annoying FORTRAN programmers
Work/Research Interests Structural bioinformatics
Biopython Contributions Bio.PDB, KDTree, SVDSuperimposer
Relevant URL http://www.binf.ku.dk/users/thamelry


Michael Hoffman

E-mail grouse at alumni period utexas period net
Affiliation The University of Texas at Austin
Location Austin, TX, USA
Uses Python for Biopython!
Work/Research Interests RNA, Genome annotations
Biopython Contributions Bio.GFF, Bio.DocSQL
Relevant URL http://spice.cc.utexas.edu/~grouse/


Frank Kauff

E-mail fkauff at biologie uni-kl de
Affiliation University of Kaiserslautern
Location Kaiserslautern, Germany
Uses Python for Phylogenetics and everything else
Work/Research Interests Phylogenetics and all that's related, Fungi, Lichens, Cyanobacteria
Biopython Contributions Phd, Ace, Nexus (mostly with C. Cox)
Relevant URL http://www.uni-kl.de/wcms/ag-kauff.html


Chris Lasher

E-mail chris.lasher@gmail.com
Affiliation Virginia Bioinformatics Institute
Location Blacksburg, VA
Uses Python for Putting the joy back in programming
Work/Research Interests Bacterial genomics
Biopython Contributions Subversion migration
Relevant URL http://gotgenes.com/


Leighton Pritchard

E-mail lpritc(squiggly symbol)scri ac uk
Affiliation Scottish Crop Research Institute
Location Invergowrie, Scotland
Uses Python for Generally when I have to explain to a computer exactly what I want it to do
Work/Research Interests Comparative genomics; Systems Biology; Protein sequence-structure-function relationships; Plant host-pathogen interactions and genomics (heavy on the pathogens).
Biopython Contributions GenomeDiagram, bits and bobs
Relevant URL http://www.scri.ac.uk/staff/leightonpritchard


Bartek Wilczyński

E-mail bartek_AT_rezolwenta.eu.org
Affiliation Institute of Mathematics, Polish Academy of Science
Location Warsaw, Poland
Uses Python for most of his computations
Work/Research Interests mathematical models of gene regulation
Biopython Contributions Bio.AlignAce
Relevant URL http://bartek.rezolwenta.eu.org


Harry Zuzan

E-mail iliketobicycle@yahoo.ca
Affiliation Genome Quebec
Location Montreal
Uses Python for you name it
Work/Research Interests Statistics applied to molecular biology and genetics
Biopython Contributions Affy package for Affymetrix data
Relevant URL http://www.oligopython.org
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