Participants

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Latest revision as of 14:26, 28 June 2014

Note: People are listed here alphabetically by surname. This is only a partial listing, see also the contributor listing in the Biopython source code.


Contents

Tiago Antao

E-mail tiagoantao@gmail.com
Affiliation Liverpool School of Tropical Medicine, UK
Location Liverpool, UK
Uses Python for Almost all programming stuff
Work/Research Interests Population genetics, infectious diseases (malaria), Anopheles gambiae (malaria vector), big data, data science
Biopython Contributions Bio.PopGen, testing, Python 3 zealot
Relevant URL http://tiago.org

Wibowo Arindrarto

E-mail bow@bow.web.id
Affiliation Leiden University Medical Center
Location Leiden, The Netherlands
Uses Python for exploring NGS data and other programming-related things
Work/Research Interests RNA-seq, variant calling, analyzing NGS data in computing clusters
Biopython Contributions Bio.SearchIO + fixes here and there
Relevant URL http://bow.web.id


Sebastian Bassi

E-mail sbassi@genesdigitales.com
Affiliation Universidad Nacional de Quilmes
Location Balcarce, Buenos Aires, Argentina
Uses Python for Bioinformatics and data manipulation
Work/Research Interests IT Manager Advanta Seeds in Balcarce Research Station
Biopython Contributions LCC and primer Tm calculation function
Relevant URL http://www.bioinformatica.info


Jeffrey Chang

E-mail jchang@smi.stanford.edu
Affiliation Postdoctoral Fellow, Duke University
Location Durham, NC
Uses Python for Eating spam
Work/Research Interests Bioinformatics
Biopython Contributions Co-Founder
Relevant URL http://www.jeffchang.com/


Brad Chapman

Affiliation Massachusetts General Hospital
Location Boston, MA
Biopython Contributions Docs, GenBank, BioSQL
Relevant URL http://bcbio.wordpress.com/


Peter Cock

E-mail See my web page
Affiliation The James Hutton Institute (formerly SCRI); previously MOAC Doctoral Training Centre, University of Warwick
Location Dundee, Scotland, UK
Uses Python for Bioinformatics, controlling R with rpy, ...
Work/Research Interests Bacterial signalling, genomics, sequencings
Biopython Contributions Sequence parsing including Bio.SeqIO, Bio.AlignIO, maintaining the BioSQL interface, and documentation
Relevant URL http://www.hutton.ac.uk/staff/peter-cock and http://www.warwick.ac.uk/go/peter_cock/python/
github http://github.com/peterjc

Andrew Dalke

E-mail dalke@dalkescientific.com
Affiliation Dalke Scientific Software, LLC
Location Santa Fe, NM
Uses Python for Just about anything
Work/Research Interests Large-scale usable systems for scientists
Biopython Contributions Co-Founder, Seq, Martel, indexing, EUtils, patterns, parsing, ...
Relevant URL http://www.dalkescientific.com/


Michiel de Hoon

E-mail See my web page
Affiliation RIKEN Omics Science Center
Location Yokohama
Uses Python for High-throughput data analysis & Scientific visualization
Work/Research Interests RNA Genomics
Biopython Contributions Bio.Cluster; Bio.Entrez; Windows installer
Relevant URL http://bonsai.ims.u-tokyo.ac.jp/~mdehoon


Iddo Friedberg

E-mail idoerg "at" gmail.com
Affiliation Miami University
Location Oxford, OH, USA
Uses Python for Maintaining clandestine world domination
Work/Research Interests Structural Bioinformatics, metagenomics, genomics
Biopython Contributions SubsMat, FSSP, bits of Align, bits of the Manual, and a lot of silly questions to the lists
Relevant URL http://iddo-friedberg.org

Christian Gunning

E-mail bioboy at uga dot edu
Affiliation human, mountain
Location Athens, GA
Uses Python for strings, as glue; also on laundry and dirty dishes
Work/Research Interests arabidopsis; Biological Sequence Analysis, Durbin et al.; Primer3; www.swig.org; R programming language and rpy.sourceforge.net
Biopython Contributions
Relevant URL http://www.botany.uga.edu/courses/bioinformatics/current/index.html


Thomas Hamelryck

E-mail thamelry - binf ku dk
Affiliation University of Copenhagen
Location Copenhagen, Denmark
Uses Python for Annoying FORTRAN programmers
Work/Research Interests Structural bioinformatics
Biopython Contributions Bio.PDB, KDTree, SVDSuperimposer
Relevant URL http://www.binf.ku.dk/users/thamelry


Michael Hoffman

E-mail grouse at alumni period utexas period net
Affiliation The University of Texas at Austin
Location Austin, TX, USA
Uses Python for Biopython!
Work/Research Interests RNA, Genome annotations
Biopython Contributions Bio.GFF, Bio.DocSQL
Relevant URL http://spice.cc.utexas.edu/~grouse/


Frank Kauff

E-mail fkauff at biologie uni-kl de
Affiliation University of Kaiserslautern
Location Kaiserslautern, Germany
Uses Python for Phylogenetics and everything else
Work/Research Interests Phylogenetics and all that's related, Fungi, Lichens, Cyanobacteria
Biopython Contributions Phd, Ace, Nexus (mostly with C. Cox)
Relevant URL http://www.uni-kl.de/wcms/ag-kauff.html


Leighton Pritchard

E-mail leighton.pritchard@hutton.ac.uk
Affiliation The James Hutton Institute (formerly the Scottish Crop Research Institute)
Location Invergowrie, Scotland
Uses Python for Generally when I have to explain to a computer exactly what I want it to do
Work/Research Interests Comparative genomics; Systems Biology; Protein sequence-structure-function relationships; Plant host-pathogen interactions and genomics (heavy on the pathogens).
Biopython Contributions GenomeDiagram, bits and bobs
Relevant URL http://www.hutton.ac.uk/staff/leighton-pritchard

João Rodrigues

E-mail anaryin@gmail.com
Affiliation Bijvoet Center for Biomolecular Research, Utrecht University
Location Utrecht, NL
Uses Python for Pretty much all my (programming) tasks
Work/Research Interests Structural Biology, Biophysics, Molecular Simulations, Protein Docking, Homology Modelling, etc..
Biopython Contributions Bio.PDB (here and there)
Relevant URL http://nmr.chem.uu.nl/~joaor


Eric Talevich

Affiliation Department of Dermatology, University of California, San Francisco
Location San Francisco, California, USA
Uses Python for Scripting, prototyping, math, glue, web dev -- it's my default choice
Work/Research Interests Cell signaling networks; cancer; pathogens
Biopython Contributions Bio.Phylo, occasional maintenance of Bio.PDB
Relevant URL http://etalog.blogspot.com

Bartek Wilczyński

E-mail bartek_AT_rezolwenta.eu.org
Affiliation Institute of Mathematics, Polish Academy of Science
Location Warsaw, Poland
Uses Python for most of his computations
Work/Research Interests mathematical models of gene regulation
Biopython Contributions Bio.AlignAce
Relevant URL http://bartek.rezolwenta.eu.org

Harry Zuzan

E-mail iliketobicycle@yahoo.ca
Affiliation Genome Quebec
Location Montreal
Uses Python for you name it
Work/Research Interests Statistics applied to molecular biology and genetics
Biopython Contributions Affy package for Affymetrix data
Relevant URL http://www.oligopython.org
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