Participants

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=== Participants ===
+
Note: People are listed here alphabetically by surname.
 +
This is only a partial listing, see also the [http://biopython.org/SRC/biopython/CONTRIB contributor listing] in the Biopython source code.
  
|Name                    |Sebastian Bassi|
+
 
|E-mail         |sbassi@genesdigitales.com|
+
= Tiago Antao =
|Affiliation         |Universidad Nacional de Quilmes.|
+
{| border="0"
|Location         |Balcarce, Buenos Aires, Argentina|
+
|-
|Uses Python for        |Bioinformatics and data manipulation|
+
 
|Work/Research Interests |IT Manager Advanta Seeds in Balcarce Research Station|
+
| E-mail           || [mailto:tiagoantao@gmail.com tiagoantao@gmail.com]
|Biopython Contributions |LCC and primer Tm calculation function|
+
 
|Relevant URL            |http://www.bioinformatica.info|
+
|-
 +
 
 +
| Affiliation           || Liverpool School of Tropical Medicine, UK
 +
 
 +
|-
 +
 
 +
| Location           || Oxford, UK
 +
 
 +
|-
 +
 
 +
| Uses Python for        || Almost all programming stuff
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || Population genetics, infectious diseases (malaria), Anopheles gambiae (malaria vector), selection, effective population size
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || Bio.PopGen, testing
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://tiago.org
 +
 
 +
|}
 +
 
 +
= Sebastian Bassi =
 +
{| border="0"
 +
|-
 +
 
 +
| E-mail           || [mailto:sbassi@genesdigitales.com sbassi@genesdigitales.com]
 +
 
 +
|-
 +
 
 +
| Affiliation           || Universidad Nacional de Quilmes
 +
 
 +
|-
 +
 
 +
| Location           || Balcarce, Buenos Aires, Argentina
 +
 
 +
|-
 +
 
 +
| Uses Python for        || Bioinformatics and data manipulation
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || IT Manager Advanta Seeds in Balcarce Research Station
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || LCC and primer Tm calculation function
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://www.bioinformatica.info
 +
 
 +
|}
 +
 
 +
 
 +
= Jeffrey Chang =
 +
{| border="0"
 +
|-
 +
 
 +
| E-mail                  || [mailto:jchang@smi.stanford.edu jchang@smi.stanford.edu]
 +
 
 +
|-
 +
 
 +
| Affiliation            || Postdoctoral Fellow, Duke University
 +
 
 +
|-
 +
 
 +
| Location                || Durham, NC
 +
 
 +
|-
 +
 
 +
| Uses Python for        || Eating spam
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || Bioinformatics
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || Co-Founder
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://www.jeffchang.com/
 +
 
 +
|}
 +
 
 +
 
 +
= Brad Chapman =
 +
{| border="0"
 +
|-
 +
 
 +
| Affiliation            || Massachusetts General Hospital
 +
 
 +
|-
 +
 
 +
| Location                || Boston, MA
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || Docs, GenBank, [[BioSQL]]
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://bcbio.wordpress.com/
 +
 
 +
|}
 +
 
 +
 
 +
= [[User:Peter|Peter Cock]] =
 +
{| border="0"
 +
|-
 +
 
 +
| E-mail                  || See my web page
 +
 
 +
|-
 +
 
 +
| Affiliation            || The James Hutton Institute (formerly SCRI); previously MOAC Doctoral Training Centre, University of Warwick
 +
 
 +
|-
 +
 
 +
| Location                || Dundee, Scotland, UK
 +
 
 +
|-
 +
 
 +
| Uses Python for        || Bioinformatics, controlling R with rpy, ...
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || Bacterial signalling, genomics, sequencings
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || Sequence parsing including [[SeqIO|Bio.SeqIO]], [[AlignIO|Bio.AlignIO]], maintaining the [[BioSQL|BioSQL interface]], and documentation
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://www.hutton.ac.uk/staff/peter-cock and http://www.warwick.ac.uk/go/peter_cock/python/
 +
 
 +
|-
 +
 
 +
| github || http://github.com/peterjc
 +
 
 +
|}
 +
 
 +
= Andrew Dalke =
 +
{| border="0"
 +
|-
 +
 
 +
| E-mail                  || [mailto:dalke@dalkescientific.com dalke@dalkescientific.com]
 +
 
 +
|-
 +
 
 +
| Affiliation            || Dalke Scientific Software, LLC
 +
 
 +
|-
 +
 
 +
| Location                || Santa Fe, NM
 +
 
 +
|-
 +
 
 +
| Uses Python for        || Just about anything
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || Large-scale usable systems for scientists
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || Co-Founder, Seq, Martel, indexing, EUtils, patterns, parsing, ...
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://www.dalkescientific.com/
 +
 
 +
|}
 +
 
 +
 
 +
= [[User:Mdehoon|Michiel de Hoon]] =
 +
{| border="0"
 +
|-
 +
 
 +
| E-mail                  || See my web page
 +
 
 +
|-
 +
 
 +
| Affiliation            || RIKEN Omics Science Center
 +
 
 +
|-
 +
 
 +
| Location                || Yokohama
 +
 
 +
|-
 +
 
 +
| Uses Python for        || High-throughput data analysis & Scientific visualization
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || RNA Genomics
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || Bio.Cluster; Bio.Entrez; Windows installer
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://bonsai.ims.u-tokyo.ac.jp/~mdehoon
 +
 
 +
|}
 +
 
 +
 
 +
= Iddo Friedberg =
 +
{| border="0"
 +
|-
 +
 
 +
| E-mail                  || idoerg "at" gmail.com
 +
 
 +
|-
 +
 
 +
| Affiliation            || Miami University
 +
 
 +
|-
 +
 
 +
| Location                || Oxford, OH, USA
 +
 
 +
|-
 +
 
 +
| Uses Python for        || Maintaining clandestine world domination
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || Structural Bioinformatics, metagenomics, genomics
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || SubsMat, FSSP, bits of Align, bits of the Manual, and a lot of silly questions to the lists
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://iddo-friedberg.org
 +
 
 +
|}
 +
 
 +
= Christian Gunning =
 +
{| border="0"
 +
|-
 +
 
 +
| E-mail                  || bioboy at uga dot edu
 +
 
 +
|-
 +
 
 +
| Affiliation            || human, mountain
 +
 
 +
|-
 +
 
 +
| Location                || Athens, GA
 +
 
 +
|-
 +
 
 +
| Uses Python for        || strings, as glue; also on laundry and dirty dishes
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || arabidopsis; Biological Sequence Analysis, Durbin et al.; Primer3; www.swig.org; R programming language and rpy.sourceforge.net
 +
 
 +
|-
 +
 
 +
| Biopython Contributions ||
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://www.botany.uga.edu/courses/bioinformatics/current/index.html
 +
 
 +
|}
 +
 
 +
 
 +
= Thomas Hamelryck =
 +
{| border="0"
 +
|-
 +
 
 +
| E-mail                  || thamelry - binf ku dk
 +
 
 +
|-
 +
 
 +
| Affiliation            || University of Copenhagen
 +
 
 +
|-
 +
 
 +
| Location                || Copenhagen, Denmark
 +
 
 +
|-
 +
 
 +
| Uses Python for        || Annoying FORTRAN programmers
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || Structural bioinformatics
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || Bio.PDB, KDTree, SVDSuperimposer
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://www.binf.ku.dk/users/thamelry
 +
 
 +
|}
 +
 
 +
 
 +
= Michael Hoffman =
 +
{| border="0"
 +
|-
 +
 
 +
| E-mail                  || grouse at alumni period utexas period net
 +
 
 +
|-
 +
 
 +
| Affiliation            || The University of Texas at Austin
 +
 
 +
|-
 +
 
 +
| Location                || Austin, TX, USA
 +
 
 +
|-
 +
 
 +
| Uses Python for        || Biopython!
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || RNA, Genome annotations
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || Bio.GFF, Bio.DocSQL
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://spice.cc.utexas.edu/~grouse/
 +
 
 +
|}
 +
 
 +
 
 +
= Frank Kauff =
 +
{| border="0"
 +
|-
 +
 
 +
| E-mail                  || fkauff at biologie uni-kl de
 +
 
 +
|-
 +
 
 +
| Affiliation            || University of Kaiserslautern
 +
 
 +
|-
 +
 
 +
| Location                || Kaiserslautern, Germany
 +
 
 +
|-
 +
 
 +
| Uses Python for        || Phylogenetics and everything else
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || Phylogenetics and all that's related, Fungi, Lichens, Cyanobacteria
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || Phd, Ace, Nexus (mostly with C. Cox)
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://www.uni-kl.de/wcms/ag-kauff.html
 +
 
 +
|}
 +
 
 +
 
 +
= [[User:lpritc|Leighton Pritchard]] =
 +
{| border="0"
 +
|-
 +
 
 +
| E-mail                  || lpritc(squiggly symbol)scri ac uk
 +
 
 +
|-
 +
 
 +
| Affiliation            || [http://www.scri.ac.uk/ Scottish Crop Research Institute]
 +
 
 +
|-
 +
 
 +
| Location                || Invergowrie, Scotland
 +
 
 +
|-
 +
 
 +
| Uses Python for        || Generally when I have to explain to a computer exactly what I want it to do
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || Comparative genomics; Systems Biology; Protein sequence-structure-function relationships; Plant host-pathogen interactions and genomics (heavy on the pathogens).
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || GenomeDiagram, bits and bobs
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://www.scri.ac.uk/staff/leightonpritchard
 +
 
 +
|}
 +
 
 +
= João Rodrigues =
 +
{| border="0"
 +
|-
 +
 
 +
| E-mail           || [mailto:anaryin@gmail.com anaryin@gmail.com]
 +
 
 +
|-
 +
 
 +
| Affiliation           || Bijvoet Center for Biomolecular Research, Utrecht University
 +
 
 +
|-
 +
 
 +
| Location           || Utrecht, NL
 +
 
 +
|-
 +
 
 +
| Uses Python for        || Pretty much all my (programming) tasks
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || Structural Biology, Biophysics, Molecular Simulations, Protein Docking, Homology Modelling, etc..
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || Bio.PDB (here and there)
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://nmr.chem.uu.nl/~joaor
 +
 
 +
|}
 +
 
 +
 
 +
= Eric Talevich =
 +
{| border="0"
 +
|-
 +
 
 +
| Affiliation            || Institute of Bioinformatics, University of Georgia
 +
 
 +
|-
 +
 
 +
| Location                || Athens, Georgia, USA
 +
 
 +
|-
 +
 
 +
| Uses Python for        || Scripting, prototyping, glue, web dev -- it's my default choice
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || Cell signaling networks in pathogenic protozoa; cancer
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || Bio.Phylo, occasional maintenance of Bio.PDB
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://etalog.blogspot.com
 +
 
 +
|}
 +
 
 +
= Bartek Wilczyński =
 +
{| border="0"
 +
|-
 +
 
 +
| E-mail                  || bartek_AT_rezolwenta.eu.org
 +
 
 +
|-
 +
 
 +
| Affiliation            || Institute of Mathematics, Polish Academy of Science
 +
 
 +
|-
 +
 
 +
| Location                || Warsaw, Poland
 +
 
 +
|-
 +
 
 +
| Uses Python for        || most of his computations
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || mathematical models of gene regulation
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || Bio.AlignAce
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://bartek.rezolwenta.eu.org
 +
 
 +
|}
 +
 
 +
= Harry Zuzan =
 +
{| border="0"
 +
|-
 +
 
 +
| E-mail                  || [mailto:iliketobicycle@yahoo.ca iliketobicycle@yahoo.ca]
 +
 
 +
|-
 +
 
 +
| Affiliation            || Genome Quebec
 +
 
 +
|-
 +
 
 +
| Location                || Montreal
 +
 
 +
|-
 +
 
 +
| Uses Python for        || you name it
 +
 
 +
|-
 +
 
 +
| Work/Research Interests || Statistics applied to molecular biology and genetics
 +
 
 +
|-
 +
 
 +
| Biopython Contributions || Affy package for Affymetrix data
 +
 
 +
|-
 +
 
 +
| Relevant URL            || http://www.oligopython.org
 +
 
 +
|}

Revision as of 18:15, 2 November 2013

Note: People are listed here alphabetically by surname. This is only a partial listing, see also the contributor listing in the Biopython source code.


Contents

Tiago Antao

E-mail tiagoantao@gmail.com
Affiliation Liverpool School of Tropical Medicine, UK
Location Oxford, UK
Uses Python for Almost all programming stuff
Work/Research Interests Population genetics, infectious diseases (malaria), Anopheles gambiae (malaria vector), selection, effective population size
Biopython Contributions Bio.PopGen, testing
Relevant URL http://tiago.org

Sebastian Bassi

E-mail sbassi@genesdigitales.com
Affiliation Universidad Nacional de Quilmes
Location Balcarce, Buenos Aires, Argentina
Uses Python for Bioinformatics and data manipulation
Work/Research Interests IT Manager Advanta Seeds in Balcarce Research Station
Biopython Contributions LCC and primer Tm calculation function
Relevant URL http://www.bioinformatica.info


Jeffrey Chang

E-mail jchang@smi.stanford.edu
Affiliation Postdoctoral Fellow, Duke University
Location Durham, NC
Uses Python for Eating spam
Work/Research Interests Bioinformatics
Biopython Contributions Co-Founder
Relevant URL http://www.jeffchang.com/


Brad Chapman

Affiliation Massachusetts General Hospital
Location Boston, MA
Biopython Contributions Docs, GenBank, BioSQL
Relevant URL http://bcbio.wordpress.com/


Peter Cock

E-mail See my web page
Affiliation The James Hutton Institute (formerly SCRI); previously MOAC Doctoral Training Centre, University of Warwick
Location Dundee, Scotland, UK
Uses Python for Bioinformatics, controlling R with rpy, ...
Work/Research Interests Bacterial signalling, genomics, sequencings
Biopython Contributions Sequence parsing including Bio.SeqIO, Bio.AlignIO, maintaining the BioSQL interface, and documentation
Relevant URL http://www.hutton.ac.uk/staff/peter-cock and http://www.warwick.ac.uk/go/peter_cock/python/
github http://github.com/peterjc

Andrew Dalke

E-mail dalke@dalkescientific.com
Affiliation Dalke Scientific Software, LLC
Location Santa Fe, NM
Uses Python for Just about anything
Work/Research Interests Large-scale usable systems for scientists
Biopython Contributions Co-Founder, Seq, Martel, indexing, EUtils, patterns, parsing, ...
Relevant URL http://www.dalkescientific.com/


Michiel de Hoon

E-mail See my web page
Affiliation RIKEN Omics Science Center
Location Yokohama
Uses Python for High-throughput data analysis & Scientific visualization
Work/Research Interests RNA Genomics
Biopython Contributions Bio.Cluster; Bio.Entrez; Windows installer
Relevant URL http://bonsai.ims.u-tokyo.ac.jp/~mdehoon


Iddo Friedberg

E-mail idoerg "at" gmail.com
Affiliation Miami University
Location Oxford, OH, USA
Uses Python for Maintaining clandestine world domination
Work/Research Interests Structural Bioinformatics, metagenomics, genomics
Biopython Contributions SubsMat, FSSP, bits of Align, bits of the Manual, and a lot of silly questions to the lists
Relevant URL http://iddo-friedberg.org

Christian Gunning

E-mail bioboy at uga dot edu
Affiliation human, mountain
Location Athens, GA
Uses Python for strings, as glue; also on laundry and dirty dishes
Work/Research Interests arabidopsis; Biological Sequence Analysis, Durbin et al.; Primer3; www.swig.org; R programming language and rpy.sourceforge.net
Biopython Contributions
Relevant URL http://www.botany.uga.edu/courses/bioinformatics/current/index.html


Thomas Hamelryck

E-mail thamelry - binf ku dk
Affiliation University of Copenhagen
Location Copenhagen, Denmark
Uses Python for Annoying FORTRAN programmers
Work/Research Interests Structural bioinformatics
Biopython Contributions Bio.PDB, KDTree, SVDSuperimposer
Relevant URL http://www.binf.ku.dk/users/thamelry


Michael Hoffman

E-mail grouse at alumni period utexas period net
Affiliation The University of Texas at Austin
Location Austin, TX, USA
Uses Python for Biopython!
Work/Research Interests RNA, Genome annotations
Biopython Contributions Bio.GFF, Bio.DocSQL
Relevant URL http://spice.cc.utexas.edu/~grouse/


Frank Kauff

E-mail fkauff at biologie uni-kl de
Affiliation University of Kaiserslautern
Location Kaiserslautern, Germany
Uses Python for Phylogenetics and everything else
Work/Research Interests Phylogenetics and all that's related, Fungi, Lichens, Cyanobacteria
Biopython Contributions Phd, Ace, Nexus (mostly with C. Cox)
Relevant URL http://www.uni-kl.de/wcms/ag-kauff.html


Leighton Pritchard

E-mail lpritc(squiggly symbol)scri ac uk
Affiliation Scottish Crop Research Institute
Location Invergowrie, Scotland
Uses Python for Generally when I have to explain to a computer exactly what I want it to do
Work/Research Interests Comparative genomics; Systems Biology; Protein sequence-structure-function relationships; Plant host-pathogen interactions and genomics (heavy on the pathogens).
Biopython Contributions GenomeDiagram, bits and bobs
Relevant URL http://www.scri.ac.uk/staff/leightonpritchard

João Rodrigues

E-mail anaryin@gmail.com
Affiliation Bijvoet Center for Biomolecular Research, Utrecht University
Location Utrecht, NL
Uses Python for Pretty much all my (programming) tasks
Work/Research Interests Structural Biology, Biophysics, Molecular Simulations, Protein Docking, Homology Modelling, etc..
Biopython Contributions Bio.PDB (here and there)
Relevant URL http://nmr.chem.uu.nl/~joaor


Eric Talevich

Affiliation Institute of Bioinformatics, University of Georgia
Location Athens, Georgia, USA
Uses Python for Scripting, prototyping, glue, web dev -- it's my default choice
Work/Research Interests Cell signaling networks in pathogenic protozoa; cancer
Biopython Contributions Bio.Phylo, occasional maintenance of Bio.PDB
Relevant URL http://etalog.blogspot.com

Bartek Wilczyński

E-mail bartek_AT_rezolwenta.eu.org
Affiliation Institute of Mathematics, Polish Academy of Science
Location Warsaw, Poland
Uses Python for most of his computations
Work/Research Interests mathematical models of gene regulation
Biopython Contributions Bio.AlignAce
Relevant URL http://bartek.rezolwenta.eu.org

Harry Zuzan

E-mail iliketobicycle@yahoo.ca
Affiliation Genome Quebec
Location Montreal
Uses Python for you name it
Work/Research Interests Statistics applied to molecular biology and genetics
Biopython Contributions Affy package for Affymetrix data
Relevant URL http://www.oligopython.org
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