March 2010 Archives by date

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Starting: Mon Mar 1 13:14:45 EST 2010
Ending: Wed Mar 31 18:39:06 EDT 2010
Messages: 155

• [Biopython-dev] [Bug 2551] Adding advanced __getitem__ to generic alignment, e.g. align[1:2, 5:-5]   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Merging Bio.SeqIO SFF support?   Kevin Jacobs <jacobs at bioinformed.com>
• [Biopython-dev] Merging Bio.SeqIO SFF support?   Peter
• [Biopython-dev] Merging Bio.SeqIO SFF support?   Peter
• [Biopython-dev] Alignment object   Peter
• [Biopython-dev] Merging Bio.SeqIO SFF support?   Kevin Jacobs <jacobs at bioinformed.com>
• [Biopython-dev] Merging Bio.SeqIO SFF support?   Kevin Jacobs <jacobs at bioinformed.com>
• [Biopython-dev] Alignment object   Kevin Jacobs <jacobs at bioinformed.com>
• [Biopython-dev] Merging Bio.SeqIO SFF support?   Peter
• [Biopython-dev] Alignment object   Peter
• [Biopython-dev] Merging Bio.SeqIO SFF support?   Kevin Jacobs <jacobs at bioinformed.com>
• [Biopython-dev] Merging Bio.SeqIO SFF support?   Peter
• [Biopython-dev] Merging Bio.SeqIO SFF support?   Kevin Jacobs <jacobs at bioinformed.com>
• [Biopython-dev] Alignment object   Brad Chapman
• [Biopython-dev] Merging Bio.SeqIO SFF support?   Peter
• [Biopython-dev] Alignment object   Peter
• [Biopython-dev] Alignment object   Kevin Jacobs <jacobs at bioinformed.com>
• [Biopython-dev] Alignment object   Brad Chapman
• [Biopython-dev] EMBOSS eprimer3 parser   Peter
• [Biopython-dev] [Bug 2968] Modifications to Emboss eprimer3 parser and associated files   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Alignment object   Peter
• [Biopython-dev] Alignment object   Peter
• [Biopython-dev] Alignment object   Kevin Jacobs <jacobs at bioinformed.com>
• [Biopython-dev] Alignment object   Brad Chapman
• [Biopython-dev] Alignment object   Aaron Quinlan
• [Biopython-dev] Alignment object   Kevin Jacobs <jacobs at bioinformed.com>
• [Biopython-dev] Alignment object   Kevin Jacobs <jacobs at bioinformed.com>
• [Biopython-dev] Alignment object   Kevin Jacobs <jacobs at bioinformed.com>
• [Biopython-dev] [Bug 2551] Adding advanced __getitem__ to generic alignment, e.g. align[1:2, 5:-5]   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2552] Adding alignments   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2553] Adding SeqRecord objects to an alignment (append or extend)   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2554] Creating an Alignment from a list of SeqRecord objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2554] Creating an Alignment from a list of SeqRecord objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2905] Short read alignment format SAM / BAM   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3010] Bio.KDTree is leaking memory   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Biopython & Google Summer of Code 2010 (GSoc)   Peter Cock
• [Biopython-dev] Bio.Phylo.Applications?   Peter
• [Biopython-dev] Adding format method to phylo tree object?   Peter
• [Biopython-dev] Planning for Biopython 1.54   Peter Cock
• [Biopython-dev] Planning for Biopython 1.54   Tiago Antão
• [Biopython-dev] Planning for Biopython 1.54   Andrea Pierleoni
• [Biopython-dev] Planning for Biopython 1.54   Peter Cock
• [Biopython-dev] Planning for Biopython 1.54   Andrea Pierleoni
• [Biopython-dev] Planning for Biopython 1.54   Peter Cock
• [Biopython-dev] Adding format method to phylo tree object?   Eric Talevich
• [Biopython-dev] Planning for Biopython 1.54   Eric Talevich
• [Biopython-dev] Planning for Biopython 1.54   Peter Cock
• [Biopython-dev] Adding format method to phylo tree object?   Peter
• [Biopython-dev] Planning for Biopython 1.54   Leighton Pritchard
• [Biopython-dev] Daily builds of the Tutorial (PDF and HTML)   Peter
• [Biopython-dev] Changing Seq equality   Peter
• [Biopython-dev] Planning for Biopython 1.54   Kyle
• [Biopython-dev] Planning for Biopython 1.54   Peter Cock
• [Biopython-dev] Planning for Biopython 1.54   Kyle
• [Biopython-dev] Bio.Phylo.Applications?   Eric Talevich
• [Biopython-dev] [Bug 3000] Could SeqIO.parse() store the whole, unparsed multiline entry?   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3026] New: Bio.SeqIO.InsdcIO._split_multi_line(): Your description cannot be broken into nice lines!   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3000] Could SeqIO.parse() store the whole, unparsed multiline entry?   Peter
• [Biopython-dev] Biopython & Google Summer of Code 2010 (GSoc)   Sebastian Bassi
• [Biopython-dev] [Bug 3000] Could SeqIO.parse() store the whole, unparsed multiline entry?   Peter
• [Biopython-dev] [Bug 3000] Could SeqIO.parse() store the whole, unparsed multiline entry?   Peter
• [Biopython-dev] [Bug 3026] Bio.SeqIO.InsdcIO._split_multi_line(): Your description cannot be broken into nice lines!   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3026] Bio.SeqIO.InsdcIO._split_multi_line(): Your description cannot be broken into nice lines!   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Relaxing SeqIO, AlignIO, etc write functions?   Peter
• [Biopython-dev] 3/16 BioStar - Biopython Questions   Feed My Inbox
• [Biopython-dev] Relaxing SeqIO, AlignIO, etc write functions?   Marshall Hampton
• [Biopython-dev] Primary Sequence of all protein (help)   Rodrigo Faccioli
• [Biopython-dev] Primary Sequence of all protein (help)   Peter
• [Biopython-dev] Primary Sequence of all protein (help)   Rodrigo Faccioli
• [Biopython-dev] [Bug 2966] Primer3Commandline does not use EMBOSS 6.1.0 arguments   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2966] Primer3Commandline does not use EMBOSS 6.1.0 arguments   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Primary Sequence of all protein (help)   Sebastian Bassi
• [Biopython-dev] Planning for Biopython 1.54   Kyle
• [Biopython-dev] Planning for Biopython 1.54   Tiago Antão
• [Biopython-dev] Primary Sequence of all protein (help)   Rodrigo Faccioli
• [Biopython-dev] BioSQL drivers, was: Planning for Biopython 1.54   Peter
• [Biopython-dev] Small Typo in PDBParser   João Rodrigues
• [Biopython-dev] Small Typo in PDBParser   João Rodrigues
• [Biopython-dev] Small Typo in PDBParser   Peter
• [Biopython-dev] Relaxing SeqIO, AlignIO, etc write functions?   Peter
• [Biopython-dev] Changing Seq equality   Peter
• [Biopython-dev] BioSQL drivers, was: Planning for Biopython 1.54   Kyle
• [Biopython-dev] BioSQL drivers, was: Planning for Biopython 1.54   Peter
• [Biopython-dev] Relaxing SeqIO, AlignIO, etc write functions?   Sebastian Bassi
• [Biopython-dev] [Bug 3029] New: PhyloXML.Phylogeny.is_preterminal() fails   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Google Summer of Code is *ON* for OBF projects!   Peter Cock
• [Biopython-dev] Relaxing SeqIO, AlignIO, etc write functions?   Peter
• [Biopython-dev] [Bug 3029] PhyloXML.Phylogeny.is_preterminal() fails   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Relaxing SeqIO, AlignIO, etc write functions?   Sebastian Bassi
• [Biopython-dev] [Bug 2948] _parse_pdb_header_list: bug in TITLE handling   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2948] _parse_pdb_header_list: bug in TITLE handling   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2949] _parse_pdb_header_list: REVDAT is for oldest entry.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2949] _parse_pdb_header_list: REVDAT is for oldest entry.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] GSOC 2010 Tiny-PDB project   Konstantin Okonechnikov
• [Biopython-dev] Changes to the main repo   Tiago Antão
• [Biopython-dev] GSoC: Refining the PDB-Tidy project idea   Eric Talevich
• [Biopython-dev] [Bug 2948] _parse_pdb_header_list: bug in TITLE handling   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] GSOC 2010 Tiny-PDB project   Eric Talevich
• [Biopython-dev] [Bug 2949] _parse_pdb_header_list: REVDAT is for oldest entry.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] GSOC 2010 Tiny-PDB project   Konstantin Okonechnikov
• [Biopython-dev] pylint, was: Changes to the main repo   Peter Cock
• [Biopython-dev] RNA secondary structure parsing   Kristian Rother
• [Biopython-dev] Daily builds of the Tutorial (PDF and HTML)   Peter
• [Biopython-dev] Rerooting a tree with Bio.Phylo   Peter
• [Biopython-dev] [Bug 2949] _parse_pdb_header_list: REVDAT is for oldest entry.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2949] _parse_pdb_header_list: REVDAT is for oldest entry.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2948] _parse_pdb_header_list: bug in TITLE handling   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2948] _parse_pdb_header_list: bug in TITLE handling   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2948] _parse_pdb_header_list: bug in TITLE handling   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Rerooting a tree with Bio.Phylo   Eric Talevich
• [Biopython-dev] Rerooting a tree with Bio.Phylo   Peter
• [Biopython-dev] pylint, was: Changes to the main repo   Peter Cock
• [Biopython-dev] Changing Seq equality   Peter
• [Biopython-dev] Spam on wiki   Tiago Antão
• [Biopython-dev] Spam on wiki   Peter
• [Biopython-dev] Spam on wiki   Tiago Antão
• [Biopython-dev] Spam on wiki   Peter
• [Biopython-dev] Fwd: [Utilities-announce] NCBI Revised E-utility Usage Policy   Peter
• [Biopython-dev] [Bioperl-l] Fwd: [Utilities-announce] NCBI Revised E-utility Usage Policy   Peter
• [Biopython-dev] Rerooting a tree with Bio.Phylo   Peter
• [Biopython-dev] GEO database and bio-python   Nicolas Rapin
• [Biopython-dev] GEO database and bio-python   Peter
• [Biopython-dev] GEO database and bio-python   Sean Davis
• [Biopython-dev] NCBI E-utility 100 requests rule in Bio.Entrez?   Peter
• [Biopython-dev] Rerooting a tree with Bio.Phylo   Eric Talevich
• [Biopython-dev] NCBI E-utility 100 requests rule in Bio.Entrez?   Michiel de Hoon
• [Biopython-dev] Rerooting a tree with Bio.Phylo   Cymon Cox
• [Biopython-dev] [Bug 3036] New: PhyloXML cannot read node colors created by PhyloXML   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3037] New: PhyloXMLIO creates extremely ugly xml   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Rerooting a tree with Bio.Phylo   Peter
• [Biopython-dev] [Bug 3037] PhyloXMLIO creates extremely ugly xml   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2950] Bio.PDBIO.save writes MODEL records without model id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2950] Bio.PDBIO.save writes MODEL records without model id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3037] PhyloXMLIO creates extremely ugly xml   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] NCBI E-utility 100 requests rule in Bio.Entrez?   Peter
• [Biopython-dev] Setting the NCBI Entrez tool parameter globally   Peter
• [Biopython-dev] Deprecating PropertyManager, Encodings and Bio.utils?   Peter
• [Biopython-dev] Rerooting a tree with Bio.Phylo   Brad Chapman
• [Biopython-dev] Setting the NCBI Entrez tool parameter globally   Michiel de Hoon
• [Biopython-dev] Setting the NCBI Entrez tool parameter globally   Peter
• [Biopython-dev] Rerooting a tree with Bio.Phylo   Peter
• [Biopython-dev] [Bug 2950] Bio.PDBIO.save writes MODEL records without model id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2950] Bio.PDBIO.save writes MODEL records without model id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2950] Bio.PDBIO.save writes MODEL records without model id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Relaxing SeqIO, AlignIO, etc write functions?   Peter
• [Biopython-dev] Relaxing SeqIO, AlignIO, etc write functions?   Eric Talevich
• [Biopython-dev] [Bug 3036] PhyloXML cannot read node colors created by PhyloXML   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3037] PhyloXMLIO creates extremely ugly xml   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Relaxing SeqIO, AlignIO, etc write functions?   Peter
• [Biopython-dev] Relaxing SeqIO, AlignIO, etc write functions?   Brad Chapman
• [Biopython-dev] Relaxing SeqIO, AlignIO, etc write functions?   Peter
• [Biopython-dev] Alignment object   Aaron Quinlan
• [Biopython-dev] Alignment object   Kevin Jacobs <jacobs at bioinformed.com>
• [Biopython-dev] 3/31 BioStar - Biopython Questions   Feed My Inbox
• [Biopython-dev] PDB-Tidy proposal   Carlos Ríos Vera

Last message date: Wed Mar 31 18:39:06 EDT 2010
Archived on: Wed Mar 31 18:39:11 EDT 2010

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