April 2010 Archives by subject

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Starting: Thu Apr 1 05:45:29 EDT 2010
Ending: Fri Apr 30 11:23:45 EDT 2010
Messages: 146

• [Biopython-dev] 4/14 BioStar - Biopython Questions   Feed My Inbox
• [Biopython-dev] 4/17 BioStar - Biopython Questions   Feed My Inbox
• [Biopython-dev] [Biopython] Bio.Application now subprocess?   Peter
• [Biopython-dev] [Bug 2822] Bio.Application.AbstractCommandline - properties and kwargs   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2927] Problem parsing PSI-BLAST plain text output with NCBStandalone.PSIBlastParser   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2950] Bio.PDBIO.save writes MODEL records without model id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2951] PDBParser assigns model 0 to first model no matter what...   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3000] Could SeqIO.parse() store the whole, unparsed multiline entry?   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3009] Check the FASTA m10 alignment parser works with FASTA36   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3026] Bio.SeqIO.InsdcIO._split_multi_line(): Your description cannot be broken into nice lines!   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3026] Bio.SeqIO.InsdcIO._split_multi_line(): Your description cannot be broken into nice lines!   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3042] New: test_Mafft_tool fails   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3042] test_Mafft_tool fails   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3042] test_Mafft_tool fails   Cymon Cox
• [Biopython-dev] [Bug 3043] New: test_NCBI_BLAST_tools fails   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3043] test_NCBI_BLAST_tools fails   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3043] test_NCBI_BLAST_tools fails   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3043] test_NCBI_BLAST_tools fails   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3043] test_NCBI_BLAST_tools fails   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3043] test_NCBI_BLAST_tools fails   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3044] New: PhyloXMLIO, assigning node_id causes failures on write after re-reading   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3044] PhyloXMLIO, assigning node_id causes failures on write after re-reading   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3044] PhyloXMLIO, assigning node_id causes failures on write after re-reading   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3045] New: TreeMixin, please define enumerator and other convenience methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3045] TreeMixin, please define enumerator and other convenience methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3045] TreeMixin, please define enumerator and other convenience methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3045] TreeMixin, please define enumerator and other convenience methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3045] TreeMixin, please define enumerator and other convenience methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3045] TreeMixin, please define enumerator and other convenience methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3045] TreeMixin, please define enumerator and other convenience methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3046] New: PhyloXML, please define get/set methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3046] PhyloXML, please define get/set methods   Eric Talevich
• [Biopython-dev] [Bug 3046] PhyloXML, please define get/set methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3046] PhyloXML, please define get/set methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3046] PhyloXML, please define get/set methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3046] PhyloXML, please define get/set methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3046] PhyloXML, please define get/set methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3046] PhyloXML, please define get/set methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3046] PhyloXML, please define get/set methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3046] PhyloXML, please define get/set methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3046] PhyloXML, please define get/set methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3046] PhyloXML, please define get/set methods   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3047] New: PhyloXML, behavior on setting color and width doesn't match docstring or spec   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3047] PhyloXML, behavior on setting color and width doesn't match docstring or spec   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3047] PhyloXML, behavior on setting color and width doesn't match docstring or spec   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3047] PhyloXML, behavior on setting color and width doesn't match docstring or spec   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3047] PhyloXML, behavior on setting color and width doesn't match docstring or spec   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3047] PhyloXML, behavior on setting color and width doesn't match docstring or spec   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3047] PhyloXML, behavior on setting color and width doesn't match docstring or spec   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3047] PhyloXML, behavior on setting color and width doesn't match docstring or spec   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3047] PhyloXML, behavior on setting color and width doesn't match docstring or spec   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3047] PhyloXML, behavior on setting color and width doesn't match docstring or spec   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3048] Bio.Blast.Applications.NcbitblastxCommandline   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3048] New: Bio.Blast.Applications.NcbitblastxCommandline   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3054] Add upper and lower methods to the SeqRecord   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3054] New: Add upper and lower methods to the SeqRecord   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3057] New: Incremental parsing in Bio.Emboss.PrimerSearch   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3059] New: PDBContructionException should be PDBConstructionException   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3059] PDBContructionException should be PDBConstructionException   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3060] Add ungap method to the SeqRecord?   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3060] New: Add ungap method to the SeqRecord?   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3062] GenBank/EMBL parser breaks on over-indented features   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3062] GenBank/EMBL parser breaks when features have no qualifiers   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3062] GenBank/EMBL parser breaks when features have no qualifiers   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3062] GenBank/EMBL parser breaks when features have no qualifiers   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3062] GenBank/EMBL parser breaks when features have no qualifiers   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3062] GenBank/EMBL parser breaks when features have no qualifiers   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3062] GenBank/EMBL parser breaks when features have no qualifiers   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3062] GenBank/EMBL parser breaks when features have no qualifiers   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3062] New: GenBank/EMBL parser breaks when features have no qualifiers   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3066] Iterating/looping over colums/rows of a MultipleSeqAlignment   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3066] Iterating/looping over colums/rows of a MultipleSeqAlignment   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3066] Iterating/looping over colums/rows of a MultipleSeqAlignment   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3066] New: Iterating/looping over colums/rows of a MultipleSeqAlignment   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3067] New: SPARK parser errors should be sent to stderr   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3067] SPARK parser errors should be sent to stderr   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3067] SPARK parser errors should be sent to stderr   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3069] More robust feature parser for GenBank/EMBL records   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3069] More robust feature parser for GenBank/EMBL records   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3069] More robust feature parser for GenBank/EMBL records   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3069] More robust feature parser for GenBank/EMBL records   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3069] More robust feature parser for GenBank/EMBL records   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3069] More robust feature parser for GenBank/EMBL records   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3069] More robust feature parser for GenBank/EMBL records   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3069] More robust feature parser for GenBank/EMBL records   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3069] More robust feature parser for GenBank/EMBL records   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3069] New: More robust feature parser for GenBank/EMBL records   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3071] EMBL parser does not parse RP lines correctly.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3071] EMBL parser does not parse RP lines correctly.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 3071] New: EMBL parser does not parse RP lines correctly.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] _Switch and _Option questions   Vincent Davis
• [Biopython-dev] _Switch and _Option questions   Peter
• [Biopython-dev] Another contributor for v1.54   Eric Talevich
• [Biopython-dev] Another contributor for v1.54   Peter
• [Biopython-dev] Bio.Phylo: the home stretch   Eric Talevich
• [Biopython-dev] Bio.Phylo: the home stretch   Peter
• [Biopython-dev] Biopython 1.54 beta released   Peter Cock
• [Biopython-dev] Biopython 1.54 beta released   Peter Cock
• [Biopython-dev] Biopython at the SciPy 2010 conference in Texas?   Peter Cock
• [Biopython-dev] Biopython at the SciPy 2010 conference in Texas?   Brad Chapman
• [Biopython-dev] Biopython at the SciPy 2010 conference in Texas?   Peter Cock
• [Biopython-dev] Biopython at the SciPy 2010 conference in Texas?   Bryan Bishop
• [Biopython-dev] Biopython at the SciPy 2010 conference in Texas?   Peter Cock
• [Biopython-dev] Biopython devs at iEvoBio?   David Winter
• [Biopython-dev] Biopython devs at iEvoBio?   Eric Talevich
• [Biopython-dev] Biopython devs at iEvoBio?   Nick Matzke
• [Biopython-dev] Biopython devs at iEvoBio?   david winter
• [Biopython-dev] Biopython devs at iEvoBio?   Nick Matzke
• [Biopython-dev] BOSC and OpenBio solution challenge reminder -- April 15th   Brad Chapman
• [Biopython-dev] Draft abstract for BOSC 2010 Biopython Project Update   Peter Cock
• [Biopython-dev] Draft Announcement for Biopython 1.54   David Winter
• [Biopython-dev] Draft Announcement for Biopython 1.54   Peter
• [Biopython-dev] Draft Announcement for Biopython 1.54   david winter
• [Biopython-dev] Draft Announcement for Biopython 1.54   Peter
• [Biopython-dev] epydoc formatting in Bio.Phylo   Peter
• [Biopython-dev] epydoc formatting in Bio.Phylo   Eric Talevich
• [Biopython-dev] GFF parser bug?   Eli Papa
• [Biopython-dev] GFF parser bug?   Peter
• [Biopython-dev] GFF parser bug?   Brad Chapman
• [Biopython-dev] GFF parser bug?   Eli Papa
• [Biopython-dev] Google Summer of Code - accepted students   Peter Cock
• [Biopython-dev] PDB-Tidy Project - Google Summer Project Proposed   Rodrigo Faccioli
• [Biopython-dev] PhyloXML.BranchColor methods   Eric Talevich
• [Biopython-dev] PhyloXML.BranchColor methods   Peter
• [Biopython-dev] PhyloXML.BranchColor methods   Eric Talevich
• [Biopython-dev] PhyloXML.BranchColor methods   Peter
• [Biopython-dev] PhyloXML.BranchColor methods   Eric Talevich
• [Biopython-dev] pylint, was: Changes to the main repo   Peter Cock
• [Biopython-dev] pylint, was: Changes to the main repo   Tiago Antão
• [Biopython-dev] pylint, was: Changes to the main repo   Tiago Antão
• [Biopython-dev] pylint, was: Changes to the main repo   Peter Cock
• [Biopython-dev] Setting branch colors in Bio.Phylo   Peter
• [Biopython-dev] Setting branch colors in Bio.Phylo   Eric Talevich
• [Biopython-dev] Setting branch colors in Bio.Phylo   Peter
• [Biopython-dev] Setting branch colors in Bio.Phylo   Eric Talevich
• [Biopython-dev] String representation of trees in Bio.Phylo   Eric Talevich
• [Biopython-dev] String representation of trees in Bio.Phylo   Brad Chapman
• [Biopython-dev] String representation of trees in Bio.Phylo   Eric Talevich
• [Biopython-dev] test_PhyloXML.py error on Python 2.4   Peter
• [Biopython-dev] test_PhyloXML.py error on Python 2.4   Eric Talevich
• [Biopython-dev] test_PhyloXML.py error on Python 2.4   Peter
• [Biopython-dev] test_PhyloXML.py error on Python 2.4   Eric Talevich
• [Biopython-dev] Trunk freeze for Biopython 1.54 beta   Peter
• [Biopython-dev] Trunk freeze for Biopython 1.54 beta   Peter
• [Biopython-dev] Trunk freeze for Biopython 1.54 beta   Eric Talevich
• [Biopython-dev] Trunk freeze for Biopython 1.54 beta   Peter

Last message date: Fri Apr 30 11:23:45 EDT 2010
Archived on: Fri Apr 30 11:23:47 EDT 2010

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