November 2009 Archives by thread

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...

Starting: Sun Nov 1 14:50:31 EST 2009
Ending: Mon Nov 30 14:06:12 EST 2009
Messages: 116

• [Biopython-dev] Questions on StructureBuilder, MMCIFParser, and MMCIFlex   Paul B
  • [Biopython-dev] Questions on StructureBuilder, MMCIFParser, and MMCIFlex   Peter
    • [Biopython-dev] Questions on StructureBuilder, MMCIFParser, and MMCIFlex   Paul B
• [Biopython-dev] Questions on StructureBuilder, MMCIFParser, and MMCIFlex   Paul B
• [Biopython-dev] [Bug 2929] NCBIXML PSI-Blast parser should gather all information from XML blastgpg output   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Questions on StructureBuilder, MMCIFParser, and MMCIFlex   Paul B
  • [Biopython-dev] Questions on StructureBuilder, MMCIFParser, and MMCIFlex   Peter
    • [Biopython-dev] Questions on StructureBuilder, MMCIFParser, and MMCIFlex   Paul B
      • [Biopython-dev] Questions on StructureBuilder, MMCIFParser, and MMCIFlex   Peter
      • [Biopython-dev] Questions on StructureBuilder, MMCIFParser, and MMCIFlex   Paul B
• [Biopython-dev] [Biopython] Using SeqLocation to extract subsequence   Kyle Ellrott
  • [Biopython-dev] [Biopython] Using SeqLocation to extract subsequence   Peter
    • [Biopython-dev] [Biopython] Using SeqLocation to extract subsequence   Kyle Ellrott
      • [Biopython-dev] [Biopython] Using SeqLocation to extract subsequence   Peter
      • [Biopython-dev] [Biopython] Using SeqLocation to extract subsequence   Kyle Ellrott
      • [Biopython-dev] [Biopython] Using SeqLocation to extract subsequence   Peter
      • [Biopython-dev] [Biopython] Using SeqLocation to extract subsequence   Kyle Ellrott
      • [Biopython-dev] [Biopython] Using SeqLocation to extract subsequence   Peter
      • [Biopython-dev] [Biopython] Using SeqLocation to extract subsequence   Kyle Ellrott
• [Biopython-dev] [Bug 2731] Adding .upper() and .lower() methods to the Seq object   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2731] Adding .upper() and .lower() methods to the Seq object   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2731] Adding .upper() and .lower() methods to the Seq object   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2351] Make Seq more like a string, even subclass string?   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2943] New: MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2943] MMCIFParser only handling a single model.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Getting nucleotide sequence for GenBank features   Peter
  • [Biopython-dev] Getting nucleotide sequence for GenBank features   Peter
    • [Biopython-dev] Getting nucleotide sequence for GenBank features   Kyle Ellrott
      • [Biopython-dev] Getting nucleotide sequence for GenBank features   Peter
      • [Biopython-dev] Getting nucleotide sequence for GenBank features   Kyle Ellrott
      • [Biopython-dev] Getting nucleotide sequence for GenBank features   Peter
      • [Biopython-dev] Getting nucleotide sequence for GenBank features   Kyle Ellrott
      • [Biopython-dev] Getting nucleotide sequence for GenBank features   Peter
• [Biopython-dev] Adding SeqRecord objects   Peter
  • [Biopython-dev] Adding SeqRecord objects   Peter
    • [Biopython-dev] Adding SeqRecord objects   Peter
• [Biopython-dev] [blast-announce] BLAST 2.2.22 now available   Peter
  • [Biopython-dev] [blast-announce] BLAST 2.2.22 now available   Peter
• [Biopython-dev] [Bug 2945] New: update_pdb: shutil.move needs to be indented; try block also?   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2945] update_pdb: shutil.move needs to be indented; try block also?   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2945] update_pdb: shutil.move needs to be indented; try block also?   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2945] update_pdb: shutil.move needs to be indented; try block also?   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2945] update_pdb: shutil.move needs to be indented; try block also?   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2945] update_pdb: shutil.move needs to be indented; try block also?   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Building Gene Ontology support into Biopython   Kyle Ellrott
• [Biopython-dev] [Bug 2947] New: Bio.HMM calculates wrong viterbi path   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Seq object ungap method   Peter
  • [Biopython-dev] Seq object ungap method   Eric Talevich
    • [Biopython-dev] Seq object ungap method   Peter
      • [Biopython-dev] Seq object ungap method   Peter
• [Biopython-dev] [Bug 2948] New: _parse_pdb_header_list: bug in TITLE handling   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2949] New: _parse_pdb_header_list: REVDAT is for oldest entry.   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2950] New: Bio.PDBIO.save writes MODEL records without model id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2950] Bio.PDBIO.save writes MODEL records without model id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2950] Bio.PDBIO.save writes MODEL records without model id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2950] Bio.PDBIO.save writes MODEL records without model id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2950] Bio.PDBIO.save writes MODEL records without model id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2950] Bio.PDBIO.save writes MODEL records without model id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2951] New: PDBParser assigns model 0 to first model no matter what...   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2951] PDBParser assigns model 0 to first model no matter what...   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2951] PDBParser assigns model 0 to first model no matter what...   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2951] PDBParser assigns model 0 to first model no matter what...   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Updating http://biopython.open-bio.org/SRC/biopython/   Peter
  • [Biopython-dev] Updating http://biopython.open-bio.org/SRC/biopython/   Bartek Wilczynski
    • [Biopython-dev] Updating http://biopython.open-bio.org/SRC/biopython/   Peter
  • [Biopython-dev] Updating http://biopython.open-bio.org/SRC/biopython/   Brad Chapman
    • [Biopython-dev] Updating http://biopython.open-bio.org/SRC/biopython/   Peter
• [Biopython-dev] [Bug 2495] parse element symbols for ATOM/HETATM records (Bio.PDB.PDBParser)   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Seq object join method   Peter
  • [Biopython-dev] Seq object join method   Eric Talevich
    • [Biopython-dev] Seq object join method   Peter
  • [Biopython-dev] Seq object join method   Sebastian Bassi
    • [Biopython-dev] Seq object join method   Peter
• [Biopython-dev] [Bug 2351] Make Seq more like a string, even subclass string?   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2597] Enforce alphabet letters in Seq objects   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Merging Bio.SeqIO SFF support?   Peter
• [Biopython-dev] PubMed E-Utility 2010 DTD changes   Peter
• [Biopython-dev] Changing Seq equality   Peter
  • [Biopython-dev] Changing Seq equality   Leighton Pritchard
    • [Biopython-dev] Changing Seq equality   Jose Blanca
      • [Biopython-dev] Changing Seq equality   Peter
      • [Biopython-dev] Changing Seq equality   Jose Blanca
      • [Biopython-dev] Changing Seq equality   Peter
      • [Biopython-dev] Changing Seq equality   Brad Chapman
      • [Biopython-dev] Changing Seq equality   Peter
      • [Biopython-dev] Changing Seq equality   Peter
      • [Biopython-dev] Changing Seq equality   Eric Talevich
      • [Biopython-dev] Changing Seq equality   Peter
      • [Biopython-dev] Changing Seq equality   Eric Talevich
      • [Biopython-dev] Changing Seq equality   Peter
• [Biopython-dev] [Biopython] Subclassing Seq and SeqRecord   Jose Blanca
  • [Biopython-dev] [Biopython] Subclassing Seq and SeqRecord   Peter
    • [Biopython-dev] [Biopython] Subclassing Seq and SeqRecord   Jose Blanca
      • [Biopython-dev] [Biopython] Subclassing Seq and SeqRecord   Peter
      • [Biopython-dev] [Biopython] Subclassing Seq and SeqRecord   Jose Blanca
      • [Biopython-dev] Subclassing Seq and SeqRecord   Peter
      • [Biopython-dev] [Biopython] Subclassing Seq and SeqRecord   Jose Blanca
      • [Biopython-dev] [Biopython] Subclassing Seq and SeqRecord   Peter
      • [Biopython-dev] [Biopython] Subclassing Seq and SeqRecord   Jose Blanca
      • [Biopython-dev] [Biopython] Subclassing Seq and SeqRecord   Peter
• [Biopython-dev] [Bug 2927] Problem parsing PSI-BLAST plain text output with NCBStandalone.PSIBlastParser   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2954] New: xbbtools and SeqGui still using Bio.Translate and Bio.Transcribe   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2954] xbbtools and SeqGui still using Bio.Translate and Bio.Transcribe   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2954] xbbtools and SeqGui still using Bio.Translate and Bio.Transcribe   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2954] xbbtools and SeqGui still using Bio.Translate and Bio.Transcribe   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Bio.GFF and Brad's code   Peter
• [Biopython-dev] [Bug 2957] New: GenBank Writer Should Write Out Date   bugzilla-daemon at portal.open-bio.org

Last message date: Mon Nov 30 14:06:12 EST 2009
Archived on: Mon Nov 30 14:06:17 EST 2009

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...