June 2009 Archives by thread

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Starting: Mon Jun 1 06:15:03 EDT 2009
Ending: Tue Jun 30 20:27:21 EDT 2009
Messages: 200

• [Biopython-dev] More SwissProt inconsistencies   Peter
• [Biopython-dev] [Bug 2841] SeqFeature constructor ignores qualifiers and sub_features arguments   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2840] When a record has been loaded from BioSQL, trying to save it to another database fails with loader db_loader.load_seqrecord in _load_reference   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Biopython BOF at BOSC   Tiago Antão
  • [Biopython-dev] Biopython BOF at BOSC   Peter Cock
    • [Biopython-dev] Biopython BOF at BOSC   Brad Chapman
      • [Biopython-dev] Biopython BOF at BOSC   Tiago Antão
      • [Biopython-dev] Biopython BOF at BOSC   Peter Cock
      • [Biopython-dev] Biopython BOF at BOSC   Bartek Wilczynski
• [Biopython-dev] [Bug 2840] When a record has been loaded from BioSQL, trying to save it to another database fails with loader db_loader.load_seqrecord in _load_reference   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Biopython BOF at BOSC   Tiago Antão
• [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   Cymon Cox
    • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   Cymon Cox
      • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   Peter
      • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   Cymon Cox
      • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   Hilmar Lapp
      • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   Peter
      • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   Hilmar Lapp
      • [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   Cymon Cox
• [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2840] When a record has been loaded from BioSQL, trying to save it to another database fails with loader db_loader.load_seqrecord in _load_reference   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2806] Possible deadlock (hang) in Bio.Application using subprocess wait()   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2826] SeqRecord dbxrefs not written to GenBank by SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2817] Meta-bug for cleanup once we drop Python 2.3 support   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2848] New: SeqIO fastq routines reject valid quality socres   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2848] SeqIO fastq routines reject valid quality socres   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2848] SeqIO fastq routines reject valid quality socres   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2848] SeqIO fastq routines reject valid quality socres   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2848] SeqIO fastq routines reject valid quality socres   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2848] SeqIO fastq routines reject valid quality socres   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2848] SeqIO fastq routines reject valid quality socres   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2848] SeqIO fastq routines reject valid quality socres   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2849] New: PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2849] PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2849] PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2849] PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2849] PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2849] PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2849] PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2849] PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2849] PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2849] PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2849] PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2849] PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2849] PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2849] PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2849] PyGresql PostgreSQL driver support for BioSQL is broken   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2833] Features insertion on previous bioentry_id   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2840] When a record has been loaded from BioSQL, trying to save it to another database fails with loader db_loader.load_seqrecord in _load_reference   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Biopython logo usage   Sebastian Bassi
  • [Biopython-dev] Biopython logo usage   Iddo Friedberg
    • [Biopython-dev] Biopython logo usage   Thomas Hamelryck
      • [Biopython-dev] Biopython logo usage   Thomas Hamelryck
      • [Biopython-dev] Biopython logo usage   Jonathan Hilmer
      • [Biopython-dev] Biopython logo usage   Peter
      • [Biopython-dev] Biopython logo usage   Sebastian Bassi
  • [Biopython-dev] Biopython logo usage   Peter Cock
    • [Biopython-dev] Biopython logo usage   Sebastian Bassi
• [Biopython-dev] PolyA Sequence fails to BLAST?   João Rodrigues
  • [Biopython-dev] PolyA Sequence fails to BLAST?   Sebastian Bassi
• [Biopython-dev] skipping a bad record in SeqIO.parse   Iddo Friedberg
• [Biopython-dev] Bio.SeqIO & Bio.SwissProt; comment lines   Michiel de Hoon
  • [Biopython-dev] Bio.SeqIO & Bio.SwissProt; comment lines   Peter
• [Biopython-dev] [Biopython] skipping a bad record read in SeqIO   Peter
  • [Biopython-dev] [Biopython] skipping a bad record read in SeqIO   Iddo Friedberg
    • [Biopython-dev] [Biopython] skipping a bad record read in SeqIO   Peter
• [Biopython-dev] [Bug 2851] New: Psycopg version 1 support for BioSQL   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2851] Psycopg version 1 support for BioSQL   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2851] Psycopg version 1 support for BioSQL   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2851] Psycopg version 1 support for BioSQL   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2851] Psycopg version 1 support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] skipping a bad record read in SeqIO   Iddo Friedberg
  • [Biopython-dev] skipping a bad record read in SeqIO   Iddo Friedberg
    • [Biopython-dev] skipping a bad record read in SeqIO   Peter
      • [Biopython-dev] skipping a bad record read in SeqIO   Iddo Friedberg
• [Biopython-dev] Fwd: [Biopython] skipping a bad record read in SeqIO   Iddo Friedberg
  • [Biopython-dev] Fwd: [Biopython] skipping a bad record read in SeqIO   Peter
• [Biopython-dev] AUTHORS file on github   Peter
  • [Biopython-dev] AUTHORS file on github   Bartek Wilczynski
• [Biopython-dev] Installation documentation   Peter
• [Biopython-dev] [Bug 2853] New: Support the "in" keyword with Seq objects / define __contains__ method   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2853] Support the "in" keyword with Seq objects / define __contains__ method   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2853] Support the "in" keyword with Seq objects / define __contains__ method   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2853] Support the "in" keyword with Seq objects / define __contains__ method   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2853] Support the "in" keyword with Seq + SeqRecord objects / define __contains__ method   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2853] Support the "in" keyword with Seq + SeqRecord objects / define __contains__ method   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2351] Make Seq more like a string, even subclass string?   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Installation documentation   Giovanni Marco Dall'Olio
  • [Biopython-dev] Installation documentation   Peter
    • [Biopython-dev] Installation documentation   Peter
• [Biopython-dev] [Bug 2294] Writing GenBank files with Bio.SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2783] Using alternative start codons in Bio.Seq translate method/function   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2856] New: Duplicate positions for some restriction enzymes in some sequences   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2856] New: Duplicate positions for some restriction enzymes in some sequences   Frédéric Sohm
  • [Biopython-dev] [Bug 2856] Duplicate positions for some restriction enzymes in some sequences   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] "Your XML file did not start with <?xml"   Cymon Cox
  • [Biopython-dev] "Your XML file did not start with <?xml"   Peter
    • [Biopython-dev] "Your XML file did not start with <?xml"   Cymon Cox
      • [Biopython-dev] "Your XML file did not start with <?xml"   Cymon Cox
      • [Biopython-dev] "Your XML file did not start with <?xml"   Peter
• [Biopython-dev] GSoC Weekly Update: PhyloXML for Biopython   Eric Talevich
  • [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update: PhyloXML for Biopython   Brad Chapman
    • [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update: PhyloXML for Biopython   Eric Talevich
      • [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update: PhyloXML for Biopython   Peter
      • [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update: PhyloXML for Biopython   Eric Talevich
      • [Biopython-dev] GSoC Weekly Update: PhyloXML for Biopython   Peter
      • [Biopython-dev] GSoC Weekly Update: PhyloXML for Biopython   Eric Talevich
      • [Biopython-dev] GSoC Weekly Update: PhyloXML for Biopython   Brad Chapman
      • [Biopython-dev] GSoC Weekly Update: PhyloXML for Biopython   Peter
      • [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update: PhyloXML for Biopython   Brad Chapman
      • [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update: PhyloXML for Biopython   Diana Jaunzeikare
      • [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update: PhyloXML for Biopython   Peter
      • [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update: PhyloXML for Biopython   Eric Talevich
      • [Biopython-dev] [Wg-phyloinformatics] GSoC Weekly Update: PhyloXML for Biopython   Peter
• [Biopython-dev] Biopython-dev Digest, Vol 77, Issue 12   João Rodrigues
• [Biopython-dev] Your XML file did not start with <?xml   Peter
• [Biopython-dev] [Bug 2780] PDB file HETATMs cannot be alternative location of a residue that is an ATOM   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2781] Bio.PDB Structure instances cannot be deepcopied   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] CONTIG records in GenBank files   Peter
  • [Biopython-dev] CONTIG records in GenBank files   Iddo Friedberg
• [Biopython-dev] [Bug 2738] Speed up GenBank parsing, in particular location parsing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] SeqRecord in Tutorial (was GSoC and PhyloXML)   Peter
  • [Biopython-dev] SeqRecord in Tutorial (was GSoC and PhyloXML)   Eric Talevich
    • [Biopython-dev] SeqRecord in Tutorial (was GSoC and PhyloXML)   Peter
      • [Biopython-dev] SeqRecord in Tutorial (was GSoC and PhyloXML)   Eric Talevich
• [Biopython-dev] [Bug 2841] SeqFeature constructor ignores qualifiers and sub_features arguments   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2860] New: Writing GenBank files should output features in position order   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2860] Writing GenBank files should output features in position order   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2860] Writing GenBank files should output features in position order   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2860] Writing GenBank files should output features in position order   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2860] Writing GenBank files should output features in position order   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2860] Writing GenBank files should output features in position order   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2841] SeqFeature constructor ignores qualifiers and sub_features arguments   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Next release plans?   Peter
  • [Biopython-dev] Next release plans?   Tiago Antão
    • [Biopython-dev] Next release plans?   Peter
      • [Biopython-dev] Next release plans?   Eric Talevich
      • [Biopython-dev] Next release plans?   Tiago Antão
      • [Biopython-dev] Next release plans?   Brad Chapman
      • [Biopython-dev] Next release plans?   Peter
  • [Biopython-dev] Next release plans?   Peter
    • [Biopython-dev] Release announcement for 1.51b   David Winter
      • [Biopython-dev] Release announcement for 1.51b   Peter
• [Biopython-dev] Next release plans?   Michiel de Hoon
  • [Biopython-dev] Next release plans?   Peter
• [Biopython-dev] [Bug 2841] SeqFeature constructor ignores qualifiers and sub_features arguments   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] GSoC Weekly Update: PhyloXML for Biopython   Eric Talevich
  • [Biopython-dev] GSoC Weekly Update: PhyloXML for Biopython   Peter
    • [Biopython-dev] GSoC Weekly Update: PhyloXML for Biopython   Eric Talevich
      • [Biopython-dev] GSoC Weekly Update: PhyloXML for Biopython   Peter
• [Biopython-dev] biopython   amrita at iisermohali.ac.in
  • [Biopython-dev] biopython   Peter
• [Biopython-dev] CVS mirror server issue (and github)   Peter
  • [Biopython-dev] CVS mirror server issue (and github)   Peter
  • [Biopython-dev] CVS mirror server issue (and github)   Bartek Wilczynski
    • [Biopython-dev] CVS mirror server issue (and github)   Peter
• [Biopython-dev] CVS freeze for Biopython 1.51 (beta)   Peter
  • [Biopython-dev] CVS freeze for Biopython 1.51 (beta)   Peter
• [Biopython-dev] [Bug 2375] Coalescent support through Simcoal2   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] SeqRecord in Tutorial (was GSoC and PhyloXML)   Peter
• [Biopython-dev] Biopython beta releases on PyPi?   Peter
  • [Biopython-dev] Biopython beta releases on PyPi?   Brad Chapman
• [Biopython-dev] Biopython 1.51 beta released   Peter
• [Biopython-dev] [Bug 2738] Speed up GenBank parsing, in particular location parsing   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Bio.Sequencing   Cymon Cox
  • [Biopython-dev] Bio.Sequencing   Peter Cock
    • [Biopython-dev] Bio.Sequencing   Cymon Cox
      • [Biopython-dev] Bio.Sequencing   Peter Cock
      • [Biopython-dev] Bio.Sequencing   Cymon Cox
      • [Biopython-dev] Bio.Sequencing   Peter Cock
      • [Biopython-dev] Bio.Sequencing   Cymon Cox
      • [Biopython-dev] Bio.Sequencing   Peter
      • [Biopython-dev] Bio.Sequencing   Cymon Cox
      • [Biopython-dev] Bio.Sequencing   Peter
• [Biopython-dev] [Bug 2865] New: Phd writer class for SeqIO   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2865] Phd writer class for SeqIO   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Bug 2866] New: SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
  • [Biopython-dev] [Bug 2866] SQLite support for BioSQL   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] [Biopython] Bio.Sequencing.Ace   Jose Blanca
  • [Biopython-dev] [Biopython] Bio.Sequencing.Ace   Peter Cock
    • [Biopython-dev] [Biopython] Bio.Sequencing.Ace   Jose Blanca
      • [Biopython-dev] [Biopython] Bio.Sequencing.Ace   Peter Cock
      • [Biopython-dev] [Biopython] Bio.Sequencing.Ace   Jose Blanca
      • [Biopython-dev] [Biopython] Bio.Sequencing.Ace   Peter Cock
• [Biopython-dev] GSoC Weekly Update 6: PhyloXML for Biopython   Eric Talevich
  • [Biopython-dev] GSoC Weekly Update 6: PhyloXML for Biopython   Peter
    • [Biopython-dev] GSoC Weekly Update 6: PhyloXML for Biopython   Bartek Wilczynski
• [Biopython-dev] [Bug 2867] New: Bio.PDB.PDBList.update_pdb calls invalid os.cmd   bugzilla-daemon at portal.open-bio.org
• [Biopython-dev] Fwd: ACE files at Biopython-dev   Gordon Robertson

Last message date: Tue Jun 30 20:27:21 EDT 2009
Archived on: Tue Jun 30 21:00:37 EDT 2009

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