[Biopython-dev] [Bug 2754] Bio.PDB: Parse warnings should print to stderr, not stdout

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Feb 12 14:14:12 EST 2009


------- Comment #7 from eric.talevich at gmail.com  2009-02-12 14:14 EST -------
(In reply to comment #6)

Also, as Bruce and Peter implied may happen, this patch clobbers test_PDB.py.
Some options:

1. Redirect stderr to stdout, and modify Tests/output/test_PDB to match again.

2. Change test_PDB.py to check the exceptions separately, maybe converting it
to a unittest-style test in the process. Maybe also splitting a_structure.pdb
into multiple files, with one bug each.

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