Module SubsMat


Classes

AcceptedReplacementsMatrix
ExpectedFrequencyMatrix
LogOddsMatrix
ObservedFrequencyMatrix
SeqMat
SubstitutionMatrix

Functions

_build_exp_freq_mat
_build_log_odds_mat
_build_obs_freq_mat
_build_subs_mat
_exp_freq_table_from_obs_freq
make_log_odds_matrix
observed_frequency_to_substitution_matrix
read_text_matrix
two_mat_DJS
two_mat_correlation
two_mat_relative_entropy

Variables

ACCREP
EPSILON
EXPFREQ
LO
NOTYPE
OBSFREQ
SUBS
__package__
diagALL
diagNO
diagONLY

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