Module Nexus


Classes

Block
CharBuffer
Commandline
Nexus
NexusError
StepMatrix

Functions

_adjust_lines
_compact4nexus
_get_command_lines
_kill_comments_and_break_lines
_make_unique
_replace_parenthesized_ambigs
_seqmatrix2strmatrix
_sort_keys_by_values
_unique_label
combine
get_start_end
quotestrip
safename

Variables

CHARSET
CODONPOSITIONS
DEFAULTNEXUS
INTERLEAVE
KNOWN_NEXUS_BLOCKS
MRBAYESSAFE
PUNCTUATION
SPECIALCOMMENTS
SPECIAL_COMMANDS
TAXSET
WHITESPACE
__package__

[hide private]