Package Bio :: Package motifs :: Module meme :: Class Motif

Class Motif

object --+    
         |    
     Motif --+
             |
            Motif

A subclass of Motif used in parsing MEME (and MAST) output.

This subclass defines functions and data specific to MEME motifs.
This includes the motif name, the evalue for a motif, and its number
of occurrences.

Instance Methods

[hide private]

__init__(self, alphabet=None, instances=None)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature

source code

Inherited from Motif: __len__, __str__, format, reverse_complement, weblogo

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__

Properties

[hide private]

Inherited from Motif: anticonsensus, background, consensus, degenerate_consensus, mask, pseudocounts, pssm, pwm

Inherited from object: __class__

Method Details

[hide private]

init(self, alphabet=None, instances=None)
(Constructor)

source code

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: object.__init__: (inherited documentation)

Class Motif

__init__(self, alphabet=None, instances=None) (Constructor)

init(self, alphabet=None, instances=None)
(Constructor)