Package Bio :: Package SubsMat :: Class SubstitutionMatrix
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Class SubstitutionMatrix

source code

object --+        
      dict --+    
        SeqMat --+

Substitution matrix
Instance Methods [hide private]
calculate_relative_entropy(self, obs_freq_mat)
Calculate and return the relative entropy with respect to an observed frequency matrix
source code

Inherited from SeqMat: __add__, __init__, __mul__, __str__, __sub__, make_entropy, print_full_mat, print_mat, sum

Inherited from dict: __cmp__, __contains__, __delitem__, __eq__, __ge__, __getattribute__, __getitem__, __gt__, __iter__, __le__, __len__, __lt__, __ne__, __new__, __repr__, __setitem__, __sizeof__, clear, copy, fromkeys, get, has_key, items, iteritems, iterkeys, itervalues, keys, pop, popitem, setdefault, update, values, viewitems, viewkeys, viewvalues

Inherited from object: __delattr__, __format__, __reduce__, __reduce_ex__, __setattr__, __subclasshook__

Class Variables [hide private]

Inherited from dict: __hash__

Properties [hide private]

Inherited from object: __class__