Package Bio :: Package SeqIO :: Module _index :: Class UniprotRandomAccess

Class UniprotRandomAccess

               object --+            
                        |            
File._IndexedSeqFileProxy --+        
                            |        
          SeqFileRandomAccess --+    
                                |    
    SequentialSeqFileRandomAccess --+
                                    |
                                   UniprotRandomAccess

Random access to a UniProt XML file.

Instance Methods

[hide private]

__iter__(self)
Returns (id,offset) tuples.

source code

get_raw(self, offset)
Similar to the get method, but returns the record as a raw string.

source code

get(self, offset)
Returns SeqRecord.

source code

Inherited from SequentialSeqFileRandomAccess: __init__

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

iter(self)

source code

Returns (id,offset) tuples.

Overrides: File._IndexedSeqFileProxy.__iter__: (inherited documentation)

get_raw(self, offset)

source code

Similar to the get method, but returns the record as a raw string.

Overrides: File._IndexedSeqFileProxy.get_raw

get(self, offset)

source code

Returns SeqRecord.

Overrides: File._IndexedSeqFileProxy.get: (inherited documentation)