Package Bio :: Package SeqIO :: Module SeqXmlIO
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Module SeqXmlIO

source code

Bio.SeqIO support for the "seqxml" file format, SeqXML.

This module is for reading and writing SeqXML format files as SeqRecord objects, and is expected to be used via the Bio.SeqIO API.

SeqXML is a lightweight XML format which is supposed be an alternative for FASTA files. For more Information see http://www.seqXML.org and Schmitt et al (2011), https://doi.org/10.1093/bib/bbr025

Classes [hide private]
  XMLRecordIterator
Base class for building iterators for record style XML formats.
  SeqXmlIterator
Breaks seqXML file into SeqRecords.
  SeqXmlWriter
Writes SeqRecords into seqXML file.
Variables [hide private]
  __package__ = 'Bio.SeqIO'