Package Bio :: Package SeqIO :: Module IgIO
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Module IgIO

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Bio.SeqIO support for the "ig" (IntelliGenetics or MASE) file format.

You are expected to use this module via the Bio.SeqIO functions.

Functions [hide private]
 
IgIterator(handle, alphabet=SingleLetterAlphabet())
Iterate over IntelliGenetics records (as SeqRecord objects).
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Variables [hide private]
  __package__ = 'Bio.SeqIO'
Function Details [hide private]

IgIterator(handle, alphabet=SingleLetterAlphabet())

source code 

Iterate over IntelliGenetics records (as SeqRecord objects).

handle - input file alphabet - optional alphabet

The optional free format file header lines (which start with two semi-colons) are ignored.

The free format commentary lines at the start of each record (which start with a semi-colon) are recorded as a single string with embedded new line characters in the SeqRecord's annotations dictionary under the key 'comment'.