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__init__(self,
handle)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature |
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_read_until(self,
bool_func)
Reads the file handle until the given function returns True. |
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_parse_preamble(self)
Parses HMMER preamble (lines beginning with '#'). |
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_parse_qresult(self)
Parses a HMMER3 query block. |
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_parse_hit(self,
qid)
Parses a HMMER3 hit block, beginning with the hit table. |
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_create_hits(self,
hit_attrs,
qid)
Parses a HMMER3 hsp block, beginning with the hsp table. |
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_parse_aln_block(self,
hid,
hsp_list)
Parses a HMMER3 HSP alignment block. |
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Inherited from object:
__delattr__,
__getattribute__,
__hash__,
__new__,
__reduce__,
__reduce_ex__,
__repr__,
__setattr__,
__str__
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