Package Bio :: Package SearchIO :: Package HmmerIO :: Module hmmer3_tab :: Class Hmmer3TabIndexer

Class Hmmer3TabIndexer

               object --+        
                        |        
File._IndexedSeqFileProxy --+    
                            |    
         _index.SearchIndexer --+
                                |
                               Hmmer3TabIndexer

Known Subclasses:

Indexer class for HMMER table output.

Nested Classes

[hide private]

_parser
Parser for the HMMER table format.

Instance Methods

[hide private]

__iter__(self)
Iterates over the file handle; yields key, start offset, and length.

source code

get_raw(self, offset)
Returns the raw string of a QueryResult object from the given offset.

source code

Inherited from _index.SearchIndexer: __init__, get

Inherited from _index.SearchIndexer (private): _parse

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Class Variables

[hide private]

_query_id_idx = 2

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

iter(self)

source code

Iterates over the file handle; yields key, start offset, and length.

Overrides: File._IndexedSeqFileProxy.__iter__

get_raw(self, offset)

source code

Returns the raw string of a QueryResult object from the given offset.

Overrides: File._IndexedSeqFileProxy.get_raw