Package Bio :: Package SearchIO :: Package HmmerIO :: Module hmmer3_domtab :: Class Hmmer3DomtabHmmqueryIndexer
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Class Hmmer3DomtabHmmqueryIndexer

source code

               object --+            
                        |            
File._IndexedSeqFileProxy --+        
                            |        
         _index.SearchIndexer --+    
                                |    
      hmmer3_tab.Hmmer3TabIndexer --+
                                    |
                                   Hmmer3DomtabHmmqueryIndexer

Indexer class for HMMER domain table output that assumes HMM profile
coordinates are query coordinates.

Nested Classes [hide private]
  _parser
Parser for the HMMER domain table format that assumes HMM profile coordinates are query coordinates.
Instance Methods [hide private]

Inherited from hmmer3_tab.Hmmer3TabIndexer: __iter__, get_raw

Inherited from _index.SearchIndexer: __init__, get

Inherited from _index.SearchIndexer (private): _parse

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  _query_id_idx = 3
Properties [hide private]

Inherited from object: __class__