Package Bio :: Package SearchIO :: Package HmmerIO :: Module hmmer3_domtab :: Class Hmmer3DomtabHmmhitParser
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Class Hmmer3DomtabHmmhitParser

source code

                object --+        
hmmer3_tab.Hmmer3TabParser --+    
            Hmmer3DomtabParser --+

HMMER domain table parser using hit coordinates.

Parser for the HMMER domain table format that assumes HMM profile coordinates are hit coordinates.

Instance Methods [hide private]

Inherited from Hmmer3DomtabParser (private): _parse_qresult, _parse_row

Inherited from hmmer3_tab.Hmmer3TabParser: __init__, __iter__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  hmm_as_hit = True
Properties [hide private]

Inherited from object: __class__