Package Bio :: Package SearchIO :: Package HmmerIO :: Module hmmer3_domtab :: Class Hmmer3DomtabHmmhitIndexer

Class Hmmer3DomtabHmmhitIndexer

               object --+            
                        |            
File._IndexedSeqFileProxy --+        
                            |        
         _index.SearchIndexer --+    
                                |    
      hmmer3_tab.Hmmer3TabIndexer --+
                                    |
                                   Hmmer3DomtabHmmhitIndexer

Indexer class for HMMER domain table output that assumes HMM profile
coordinates are hit coordinates.

Nested Classes

[hide private]

_parser
Parser for the HMMER domain table format that assumes HMM profile coordinates are hit coordinates.

Instance Methods

[hide private]

Inherited from hmmer3_tab.Hmmer3TabIndexer: __iter__, get_raw

Inherited from _index.SearchIndexer: __init__, get

Inherited from _index.SearchIndexer (private): _parse

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Class Variables

[hide private]

_query_id_idx = 3

Properties

[hide private]

Inherited from object: __class__