Package Bio :: Package SearchIO :: Package HmmerIO :: Module hmmer3_domtab
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Module hmmer3_domtab

source code

Bio.SearchIO parser for HMMER domain table output format.

Classes [hide private]
  Hmmer3DomtabParser
Base hmmer3-domtab iterator.
  Hmmer3DomtabHmmhitParser
Parser for the HMMER domain table format that assumes HMM profile coordinates are hit coordinates.
  Hmmer3DomtabHmmqueryParser
Parser for the HMMER domain table format that assumes HMM profile coordinates are query coordinates.
  Hmmer3DomtabHmmhitIndexer
Indexer class for HMMER domain table output that assumes HMM profile coordinates are hit coordinates.
  Hmmer3DomtabHmmqueryIndexer
Indexer class for HMMER domain table output that assumes HMM profile coordinates are query coordinates.
  Hmmer3DomtabHmmhitWriter
Writer for hmmer3-domtab output format which writes hit coordinates as HMM profile coordinates.
  Hmmer3DomtabHmmqueryWriter
Writer for hmmer3-domtab output format which writes query coordinates as HMM profile coordinates.
Variables [hide private]
  __package__ = 'Bio.SearchIO.HmmerIO'