Package Bio :: Package SearchIO :: Package ExonerateIO :: Module _base :: Class _BaseExonerateIndexer

Class _BaseExonerateIndexer

               object --+        
                        |        
File._IndexedSeqFileProxy --+    
                            |    
         _index.SearchIndexer --+
                                |
                               _BaseExonerateIndexer

Known Subclasses:

Indexer class for Exonerate plain text.

Instance Methods

[hide private]

get_qresult_id(self, pos)

source code

__iter__(self)
Iterates over the file handle; yields key, start offset, and length.

source code

Inherited from _index.SearchIndexer: __init__, get

Inherited from _index.SearchIndexer (private): _parse

Inherited from File._IndexedSeqFileProxy: get_raw

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Class Variables

[hide private]

_parser = None

_query_mark = None

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

iter(self)

source code

Iterates over the file handle; yields key, start offset, and length.

Overrides: File._IndexedSeqFileProxy.__iter__