Package Bio :: Package Phylo :: Module _cdao_owl
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Module _cdao_owl

source code

Functions [hide private]
 
resolve_uri(s, namespaces={'cdao': 'http://purl.obolibrary.org/obo/cdao.owl#', 'obo': 'h..., cdao_to_obo=True, xml_style=False)
Converts prefixed URIs to full URIs.
source code
Variables [hide private]
  cdao_namespaces = {'cdao': 'http://purl.obolibrary.org/obo/cda...
  cdao_owl = '<?xml version="1.0"?>\n\n\n<!DOCTYPE rdf:RDF [\n ...
  cdao_elements = {'AlignmentProcedure': 'CDAO_0000032', 'AminoA...
  root = ET.fromstring(cdao_owl)
  __package__ = 'Bio.Phylo'
  cdao = 'has_Range_Start_Value'
  element = <Element '{http://www.w3.org/2002/07/owl#}DatatypePr...
  node_type = 'DatatypeProperty'
  obo = 'CDAO_0000219'
Function Details [hide private]

resolve_uri(s, namespaces={'cdao': 'http://purl.obolibrary.org/obo/cdao.owl#', 'obo': 'h..., cdao_to_obo=True, xml_style=False)

source code 
Converts prefixed URIs to full URIs. Optionally, converts CDAO
named identifiers to OBO numeric identifiers.


Variables Details [hide private]

cdao_namespaces

Value:
{'cdao': 'http://purl.obolibrary.org/obo/cdao.owl#',
 'obo': 'http://purl.obolibrary.org/obo/'}

cdao_owl

Value:
'''<?xml version="1.0"?>


<!DOCTYPE rdf:RDF [
    <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
    <!ENTITY obo "http://purl.obolibrary.org/obo/" >
    <!ENTITY dc "http://purl.org/dc/elements/1.1/" >
    <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
...

cdao_elements

Value:
{'AlignmentProcedure': 'CDAO_0000032',
 'AminoAcidResidue': 'CDAO_0000076',
 'AminoAcidResidueCharacter': 'CDAO_0000131',
 'AminoAcidResidueStateDatum': 'CDAO_0000112',
 'AncestralNode': 'CDAO_0000026',
 'BifurcatingTree': 'CDAO_0000018',
 'Bifurcation': 'CDAO_0000124',
 'Branch': 'CDAO_0000024',
...

element

Value:
<Element '{http://www.w3.org/2002/07/owl#}DatatypeProperty' at 0x5f8d6\
90>