Package Bio :: Package Phylo :: Module PhyloXML :: Class Events

Class Events

          object --+        
                   |        
BaseTree.TreeElement --+    
                       |    
            PhyloElement --+
                           |
                          Events

Events at the root node of a clade (e.g. one gene duplication).

All attributes are set to None by default, but this object can also be treated as a dictionary, in which case None values are treated as missing keys and deleting a key resets that attribute's value back to None.

Instance Methods

[hide private]

__init__(self, type=None, duplications=None, speciations=None, losses=None, confidence=None)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature

source code

items(self)

source code

keys(self)

source code

values(self)

source code

__len__(self)

source code

__getitem__(self, key)

source code

__setitem__(self, key, val)

source code

__delitem__(self, key)

source code

__iter__(self)

source code

__contains__(self, key)

source code

Inherited from BaseTree.TreeElement: __repr__, __str__

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__

Class Variables

[hide private]

ok_type = set(['fusion', 'mixed', 'other', 'speciation_or_dupl...

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, type=None, duplications=None, speciations=None, losses=None, confidence=None)
(Constructor)

source code

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: object.__init__: (inherited documentation)

Class Variable Details

[hide private]

ok_type

Value:

set(['fusion',
     'mixed',
     'other',
     'speciation_or_duplication',
     'transfer',
     'unassigned'])

Class Events

__init__(self, type=None, duplications=None, speciations=None, losses=None, confidence=None) (Constructor)

ok_type

init(self, type=None, duplications=None, speciations=None, losses=None, confidence=None)
(Constructor)