Package Bio :: Package PDB :: Module StructureAlignment' :: Class StructureAlignment
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Class StructureAlignment

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object --+

This class aligns two structures based on an alignment of their

Instance Methods [hide private]
__init__(self, fasta_align, m1, m2, si=0, sj=1)
fasta_align --- Alignment object...
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_test_equivalence(self, r1, aa1)
Test if aa in sequence fits aa in structure.
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Iterator over all residue pairs.
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Return two dictionaries that map a residue in one structure to the equivealent residue in the other structure.
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Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, fasta_align, m1, m2, si=0, sj=1)

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fasta_align --- Alignment object
m1, m2 --- two models
si, sj --- the sequences in the Alignment object that
        correspond to the structures

Overrides: object.__init__