Package Bio :: Package PDB :: Module FragmentMapper' :: Class FragmentMapper
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Class FragmentMapper

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object --+
         |
        FragmentMapper

Map polypeptides in a model to lists of representative fragments.
Instance Methods [hide private]
 
__contains__(self, res)
True if the given residue is in any of the mapped fragments.
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__getitem__(self, res)
@type res: L{Residue}
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__init__(self, model, lsize=20, flength=5, fdir='.')
x.__init__(...) initializes x; see x.__class__.__doc__ for signature
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_map(self, model)
@param model: the model that will be mapped @type model: L{Model}
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has_key(self, res)
(Obsolete)
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Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__contains__(self, res)
(In operator)

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True if the given residue is in any of the mapped fragments.

@type res: L{Residue}

__getitem__(self, res)
(Indexing operator)

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@type res: L{Residue}

@return: fragment classification @rtype: L{Fragment}

__init__(self, model, lsize=20, flength=5, fdir='.')
(Constructor)

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@param model: the model that will be mapped
@type model: L{Model}

@param lsize: number of fragments in the library
@type lsize: int

@param flength: length of fragments in the library
@type flength: int

@param fdir: directory where the definition files are
found (default=".")
@type fdir: string
Overrides: object.__init__

has_key(self, res)

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(Obsolete)

@type res: L{Residue}