Package Bio :: Package NeuralNetwork :: Package Gene :: Module Motif
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Module Motif

source code

Find and deal with motifs in biological sequence data.

Representing DNA (or RNA or proteins) in a neural network can be difficult since input sequences can have different lengths. One way to get around this problem is to deal with sequences by finding common motifs, and counting the number of times those motifs occur in a sequence. This information can then be used for creating the neural networks, with occurrences of motifs going into the network instead of raw sequence data.

Classes [hide private]
  MotifFinder
Find motifs in a set of Sequence Records.
  MotifCoder
Convert motifs and a sequence into neural network representations.
Variables [hide private]
  __package__ = 'Bio.NeuralNetwork.Gene'