Module _AlignAce

source code

This module provides code to work with the standalone version of AlignACE,
for motif search in DNA sequences.

AlignACE homepage:

http://arep.med.harvard.edu/mrnadata/mrnasoft.html

AlignACE Citations:

Computational identification of cis-regulatory elements associated with
groups of functionally related genes in Saccharomyces cerevisiae,
Hughes, JD, Estep, PW, Tavazoie S, & GM Church, Journal of Molecular
Biology 2000 Mar 10;296(5):1205-14.

Finding DNA Regulatory Motifs within Unaligned Non-Coding Sequences
Clustered by Whole-Genome mRNA Quantitation,
Roth, FR, Hughes, JD, Estep, PE & GM Church, Nature Biotechnology
1998 Oct;16(10):939-45.