Package Bio :: Package GenBank :: Module Scanner
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Module Scanner

source code

Internal code for parsing GenBank and EMBL files (PRIVATE).

This code is NOT intended for direct use. It provides a basic scanner (for use with a event consumer such as Bio.GenBank._FeatureConsumer) to parse a GenBank or EMBL file (with their shared INSDC feature table).

It is used by Bio.GenBank to parse GenBank files It is also used by Bio.SeqIO to parse GenBank and EMBL files

Feature Table Documentation: http://www.insdc.org/files/feature_table.html http://www.ncbi.nlm.nih.gov/projects/collab/FT/index.html ftp://ftp.ncbi.nih.gov/genbank/docs/

Classes [hide private]
  InsdcScanner
Basic functions for breaking up a GenBank/EMBL file into sub sections.
  EmblScanner
For extracting chunks of information in EMBL files
  _ImgtScanner
For extracting chunks of information in IMGT (EMBL like) files (PRIVATE).
  GenBankScanner
For extracting chunks of information in GenBank files
Variables [hide private]
  __package__ = 'Bio.GenBank'